RNA id: XR_006246964.1


Basic Information

Item Value
RNA id XR_006246964.1
length 1675
lncRNA type inter_gene
GC content 0.44
exon number 5
gene id LOC122323195
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14939189 ~ 14982818 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCGCGGTGACGTCAAGCCCCGATCTGACTCCATGCAAAGCGCCCCGCGATGCGCGTGCAGCGGAGCACATGGAGGAGAGCGGACGCGCGCTTAGCAGCCTGGCTAATGTAGCATGCGGGGCGCAAAATATTGGCGAATGAAGAACATTTCAGGTCTGGAAAGTGGACTGACTTGCCCAAGGCGTCCTACATGGATGAGAGAAAAATATTGAGGATGTGAGCAGTCCTTTCACCTTTAAGAGTTATCTTCAAAATGGAGTTTGTTCTTTTTTCAACGTTTCAGTTTCAGAATCCATTTGTAGTATGGGTCACCCTGCCAGTGAGGAATACGGTGAAGAGGCCATCCTGTGAGATAAGAGCACTATACCGGACAGCATGACCTTCAgaggactggactggactgaaCTTGAACTGTGTTTAGACAGCATAAGTAGAGAACAACCTCCCGCTGAAGCCATCAACCTCATTTAAACCGTAGCTCTGATGTCACCAGAGATGTTAAATAGCAGGCCAGGCACACGTGTACCTACTCTGAAGAAGGCCAGTTCAGTGGAAACTAGTAAGCAAACACTCTGAAAAGGACACACGCTCCCTCAATGTCAGCAAACATTTGGTCACAACTTCAAAGGGAAGTGACAGTCGTTTGAAACTGGGGATGACGTTGGGTGCCGTTGGAGCAGCACGAGAGGTCCCACCACGCTCCACTGCCGGCTTTTACACTCCTCAGTCCTCTCTCACCACACATCTTCCTGTGGAGATTGGTTGGCTTTGTTTCCTCTAAGATGAATGTCTCTCTGAACCTCTTGTGGCATTTGAGTGAACTGCAGTTATATTAGAGGTTCTAGCTCTGGTGATTCATCGAATAGAAACTCCAGAGGAATTTGCTGCATCACAGAACAAATCTTCTCCGATTTTCATGTGTACACGACGTTCCTTTGACATGACCATGAGAAGATGAATGATGTCTCTTGAGAAAGATCTGTTTACTGGTTCTCAATTATTCTGTCTTTCTGCCCATCCATCATCTTATCACTTTCACAGTCTCTCCACCACTTTCTTTTTCATACAGCGGTTTGTATGAATAATATATGCCACATTGCTTCGCTGTCATTAAAGGTGACCTTGGTTAATTATTGATTGGGTCAGATGATTACAGGCCTGACCTCTGTATGTTCTCGTCTGCCTCTCGGCTCAGTTTTCATGTTGACACTCCTCTTAGTATTCCTGGAGACCCTAATATGATGAattattgcttattattattgctgGGGGAGTGTTGGCGCCTTTACAGAgacatgaaatgtaaaattacaaaagtaaCCATGAATGTCAAGACTATTACTccgttttaatgaaatatgtaaGAGGTAATGTATAGTCAGTTGGTCATTATCACTAAATGAACCCCGACAGGGTGATCAGATTAAGCCCCTGAAGGGGTTTATTTTGTTACAGTGACCGGCTGACTCTAAAATGTCCCTCGTATTACCTTGCTGCTTGtcaaatgaattataaatggacttgaaaaatgttgtatttgtattgtgtttttatgtgagaCCGTGTGATTTAAGGAGTATCAAGAAATACCGTATTAGCAGCtgttatttaaacacatttgacCACCGAATATCACAACTGACCAACCAGAATAAAGCAGAGCATGATAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17957 lncRNA upstream 53123 14857372 ~ 14886069 (+) True G12143
TU17961 lncRNA upstream 60420 14866198 ~ 14878772 (+) False G12144
TU17962 lncRNA upstream 69461 14866198 ~ 14869731 (+) True G12144
TU17945 lncRNA upstream 109706 14827051 ~ 14829486 (+) True G12136
TU17944 lncRNA upstream 112247 14823161 ~ 14826945 (+) True G12135
XR_006247778.1 lncRNA downstream 42585 15025403 ~ 15026789 (+) True LOC122328201
TU18080 lncRNA downstream 52111 15034929 ~ 15037006 (+) True G12211
TU18164 lncRNA downstream 135639 15118457 ~ 15180254 (+) False G12255
TU18166 lncRNA downstream 135639 15118457 ~ 15180254 (+) True G12255
TU18172 lncRNA downstream 161128 15143946 ~ 15180254 (+) False G12255
XM_043220464.1 mRNA upstream 1234 14935722 ~ 14937958 (+) True mycb
XM_043217848.1 mRNA upstream 6512 14918221 ~ 14932680 (+) False ankhb
XM_043217840.1 mRNA upstream 6512 14918409 ~ 14932680 (+) True ankhb
XM_043217883.1 mRNA upstream 23883 14910919 ~ 14915309 (+) False otulinb
XM_043222099.1 mRNA downstream 232051 15214869 ~ 15222679 (+) True klhl18
XM_043217246.1 mRNA downstream 247188 15230006 ~ 15234855 (+) False zgc:136930
XM_043217249.1 mRNA downstream 247198 15230016 ~ 15235251 (+) True zgc:136930
XM_043217271.1 mRNA downstream 255663 15238481 ~ 15240694 (+) True ccr9a
XM_043256825.1 mRNA downstream 258979 15241797 ~ 15246316 (+) False LOC122357435
XR_006252462.1 other upstream 156215 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 156488 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 759577 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 759577 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2066047 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1284225 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2049501 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2379427 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2584023 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2624434 17607252 ~ 17608092 (+) True G13111

Expression Profile