RNA id: XM_043218488.1


Basic Information

Item Value
RNA id XM_043218488.1
length 4112
RNA type mRNA
GC content 0.47
exon number 31
gene id nrd1a
representative False

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 17094184 ~ 17105967 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCAACCTACCAGTGACAGGCAGAGCGCTGTAAAGTTCGGCTGACCCATCACCAGGATTGCAGCAGGGTCATAAACCGCCCCGTTCATCTCAACTCCAGTGCTAAAGTAGCATCGTTGCTCAAGATGCCCCAGACAAACAAGTTCAAAAGTGCTGCAGCTAGCAGTGCTGCTCAGTCTGCTGGTCCAGACCGGGGAGAAGCACTCAGAGACCCCAACGCACCTCCAGGGGACAGTGGTGGAGAGGCCAACCAAGGAGACCCTCAAATTATTAAATCTCCCAGTGACCCCAAACAATACAGATACATTGAACTGAGTAACGGACTGAGGGCTCTCCTGATCTCTGATCTGAGTGGTTTAGATGGGAAAGctgaagatgaggatgatgaagattcagaggaggaggaggaagaagaggaggcaGGGGGagggggagaggaagaggagggagaCTCGGGGGAAGGAACAGATGAGGAATCTGAAGAAGAAGGGGACAGTCAAGATAGCGACTTTGAGGAGCTTGATGAGGACAACgacaggaagaagaaaaaaggatctgaaaaacagTCTGCAGCAGCCCTTTGTATTGGTGTAGGGAGTTTCAGTGACCCTAATGACCTACCTGGCCTTGCACACTTCCTGGAGCACATGGTGTTCATGGGCAGTGAAAAGTACCCTTCTGAAAATGGCTTTGATGCATTCCTTAAAAAGCATGGCGGCAGTGATAATGCTTCCACTGATTGTGAAAGAACCATTTTCCAATTTGATGTCCAGAGAAAACGCTTCAAAGAAGCCCTTGACAGATGGGCTCAGTTTTTCATCTGTCCTCTTATGATTGAAGACGCCATTGACAGAGAAGTTGAGGCTGTGGATAGTGAATATCAGCTTGCTAAGCCTTCAGACTCTCACCGTAAGGAAATGCTCTTTGGCAGCCTAGCAAAGCCCAACCATCCCATGAGCAAGTTCTGCTGGGGAAATGCACAGACCCTGAAGACTGAGCCTAAGGAAAATAATATCAATGTTTACAAGCGACTCCGTGAGTTTTGGAAGAGATACTACTCTGCCCATTACATGACCTTAGCTGTGCAGTCTAAAGAGAGTCTTGACACCCTTGAGGAATGGGTTAGAGAAATCTTCAGTCAGGTGCCCAACAATGGACAGCTGAAACCCGATTTTTCAGACCAGTTGAGCCCCTTTGAAACACCTGCTTTCAACAAACTTTACAGAGtGGTGCCTGTTAGAAAAGTACATGCCCTTACCATCACATGGGCTCTACCCCCTCAAGAGAAGCACTATAGGGTAAAGCCTCTACATTACATTGCTTGGCTGATTGGCCATGAGGGAACTGGAAGTATCCTGTCTATGCTTCGGAGGAAGTGCTGGGCCCTGGCTTTGTTCGGAGGAAACAGTGAAACTGGTTTTGATCAGAACACCACATATTCAATATTTAGTATCTCCATCACTCTGACTGATGAGGGCTTCCAGAACTTCCATGAGGTTGCTCATCTGGTCTTCCAGTACTTGAAAATGCTTCAGACCCTTGGGCCCCAGCAGAGAATATATGAAGAAATTCAAAAGATTGAGGCCAATGAATTTCACTATCAGGAGCAGACTGATCCTATTGAATATGTGGAGGACATCTGTGAAAACATGCAGCTGTTCCCAAAAGAGGACTTCTTAACAGGAGACCAGTTAATGTTTGAGTTCAAGCCAGAGGTGATCTCTGCTGCGCTAAACCTCCTCACACCAGAGAAGGCCAACTTGCTTCTTTTGTCTCCAGAGCATGAAGGCCAGTGCCCACTCAGGGAAAAGTGGTTTGGGACCCAGTACAGTGTAGAGGacaTACAGCAGCACTGGAGAGAGCTTTGGGCAGGAGATTTCGATTTAAACCCAAGCCTTCACCTGCCTGCTGAAAATAAATTCATCGCCACCGATTTTGCCCTCAAAACCTCTGACTGTCCAGACACAGAGTACCCTGTCAGAATAATGAACAATGACAGAGGGTGTTTGTGGTATAAGAAGGACAACAAGTTCAAGATCCCCAAAGGGTACGTGCGGTTCCACCTCATATCACCTGTGGTTCAGAAGTCTCCAAAAAACCTGGTGCTTTTTGACCTGTTTGTGAATATCCTGGTGCATAACTTGGCGGAGCCGGCCTACGAGGCTGATGTGGCCCAGCTAGAATATAAATTGGTTGCAGGAGAGCATGGTCTTGTCATCAAAGTTAAAGGCTTCAACCACAAACTACCGttgCTGTTCAACCTGATTGTGGATTATCTTGCTGATTTCTCCGCCGCTCCTGATGTCTTCAGCATGTTTGCAGAGCAGCTAAAGAAAACCTACTTTAACATCCTCATCAAACCTGAGAAGCTTGGAAAAGACGTGAGGCTTCTGATTCTAGAGCACTCTCGCTGGTCAACCATTCAGAAGTACCAGGCTGTGCTGGATGGGCTCAGTGTGGATGAGCTCATGGAGTTTGTGAGCAGCTTCAAGTCAGAGCTGTACGCTGAAGGACTAGTGCAGGGAAACTTCAATAGCACTgAATCCATGGGATTTTTGCAGTATGTTACAGAGAAATTGCAATTCAAGAAGCTGTCAGTAGAGGTCCCTGTTCTCTTCAGAGTGGTAAAGCTTCCTCAGAAACATCATCTCTGCAAAGTGAAGTCTCTCAACAAAGGTGATGCAAACTCTGAGGTCACTGTGTATTACCAGTCCGGTCCTAAGAACCTTCGTGAGCACACTCTTATGGAGCTACTAGTGATGCACATGGAGGAGCCATGCTTTGATTTTCTCCGAACCAAAGAGACGCTGGGATATCATGTCTACCCAACCTGTAGAAACACATCAGGTGTTCTTGGATTCTCAGTCACAGTGGAGACTCAGGCCACCAAGTTCAACACTGAGCTGGTAGAAACAAAGATTGAGGAGTTTCTGGTGAGCTTTGGAGAAAAGATGAACAGCTTGAGTGATGAGGCTTTTAAGACACAGGTGACTGCTCTCGTCAAGCTGAAGGGTTGCGAAGACACCCATCTTGGTGAGGAGGTGGACAGGAACTGGACAGAGGTGGTCACGCAGCAATACGTCTTCGACAGACTCAGCCGAGAGATTGATGCACTGAAACTCATGACCAAGGCTGAACTCGTGAACTGGTTCATGGAACACCGGGGTGAAGGCAACAGGAAGCTAAGTGTACATGTTGTTGGTTATGGAGTAGAAGAGAACGACCCTCGTAGTGCAGAACAGCCGGCCGCTGGAGACGAAGAGGAGGAAGGCAGTAAGATGTCGTTGTATGGGGAGGTTTCCAAACTCACCTTCCTTCCTGCTTCCACTTTACTGGCCTCAGCCGCTATCATTACAGACATCCCGGCCTTCACTTCCACCCTCAATCTTTACCCTTACCACAAGATtctcaaataaacaaaagcatgGACTTCACTCTGCCAGATGGCACGCAGGCACGCACCCCCTACCTCCATCTTCCATCCTTTCTTCTCGTCTACGCTGTCATAGTAGAGCAAGGATGAGCAGAAGCCAATGCTCTCATACTTGAGAAATGAGTTTCAGCCATGTGTGCGTTCATATAACGAGCCCTGCTATTGAAATGACATTGCTGtgaatgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgggCAGGCATTGACTGGGCTCAGGTTGGGGGTCCTGCTGACAGATACAGATCATAAACATGACTTTAAACTACTCAGAATTGTGTGAATTTTATCGATAGGTCTGCAGTGTTAAGTTTGtactaatacatttataatgttctgACACTGTGCTAAAAAGTAcgaaatatatttgaattaaatgcagTAAGAGAGATTGCTGGACTGCTTTTTATGTAGCCAGCTGATGATGCCTGATGAGGATGTGTAATGGTGCTCAAAGGTAGGCATTAGAGCATGCAAGACCAAAATGATGCTTCTCTTACTGCTATAGCATCATTCTGCATTTGAAAGAACTTAAACCTGTAAACTGAGCAATGGCTAATATCACTGCTTAAATTCAGaatgtgcaaatatatatttattaaaagcaccGTGAAGCTACCAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18886 lncRNA upstream 115428 16950834 ~ 16978756 (+) False G12782
TU18885 lncRNA upstream 121646 16962728 ~ 16972538 (+) False G12782
TU18884 lncRNA upstream 121646 16970362 ~ 16972538 (+) True G12782
TU18889 lncRNA upstream 127082 16958408 ~ 16967102 (+) True G12784
TU18875 lncRNA upstream 136925 16936932 ~ 16957259 (+) True G12776
TU18939 lncRNA downstream 17172 17123139 ~ 17123367 (+) True G12818
TU18944 lncRNA downstream 27110 17133077 ~ 17134888 (+) True G12823
TU19158 lncRNA downstream 55209 17161176 ~ 17162972 (+) True G12972
TU19161 lncRNA downstream 76217 17182184 ~ 17270444 (+) True G12975
TU19169 lncRNA downstream 81150 17187117 ~ 17190607 (+) True G12982
XM_043223951.1 mRNA upstream 49411 17040002 ~ 17044773 (+) True pdcd10b
XM_043256547.1 mRNA upstream 54281 17032139 ~ 17039903 (+) True golim4b
XM_043256557.1 mRNA upstream 54281 17032139 ~ 17039903 (+) False golim4b
XM_043256563.1 mRNA upstream 54281 17032139 ~ 17039903 (+) False golim4b
XM_043256569.1 mRNA upstream 54281 17032575 ~ 17039903 (+) False golim4b
XM_043255953.1 mRNA downstream 3599 17109566 ~ 17123064 (+) True fam163aa
XM_043255971.1 mRNA downstream 3599 17109566 ~ 17123064 (+) False fam163aa
XM_043255961.1 mRNA downstream 3615 17109582 ~ 17123064 (+) False fam163aa
XM_043253529.1 mRNA downstream 18814 17124781 ~ 17128359 (+) True rabgap1l2
XM_043253285.1 mRNA downstream 39406 17145373 ~ 17147065 (+) True gadd45bb
TU18915 other upstream 56887 17032319 ~ 17037297 (+) False golim4b
TU18526 other upstream 825387 16267043 ~ 16268797 (+) True G12531
XR_006252462.1 other upstream 2311207 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 2311480 14776322 ~ 14782704 (+) False ackr4a
TU17573 other upstream 2914569 14175364 ~ 14179615 (+) False G11854
XR_006252905.1 other downstream 256278 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 460874 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 501285 17607252 ~ 17608092 (+) True G13111
XR_006247303.1 other downstream 673372 17779339 ~ 17782364 (+) False LOC122325453
TU19377 other downstream 678212 17784179 ~ 17816764 (+) True G13137

Expression Profile