RNA id: XM_043221266.1


Basic Information

Item Value
RNA id XM_043221266.1
length 1618
RNA type mRNA
GC content 0.42
exon number 10
gene id tcea1
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14363921 ~ 14368090 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCCTTCCTGCCAGAGCTGTTGCGTTCGCCGCCGGTTGATTGGTGTGTTCTCGTGTGCTTGTacgttttttaacatttaaagtccGCTTGAATTTAACATTTGCCGCCAAACACCAATAATGGgtaagaaagaagaagaagagatcATTCGGATCGCAAAAAAGATGGATAAAATGGCACAGAAGAAGAACGGGgCTGGTGCACTGGACTTACTAAAGGAACTCAAGAATATACCTATGACCCTGGAGCTGCTGCAGTCTACGAGGATCGGGATGTCAGTCAATGCCATCCGCAAGCAGAGCACAGACGATGAAGTAACCTCACTGGCCAAGTCCTTGATCAAGTCCTGGAAGAAATTGCTGGATGAACCTGCTGCAGAAAAGAACtctgaagagaaaaagaaggaaCGCACGACACCAGTGGTTTCACCATCTCAAGCCAGCCCAGAGCCCAGAGAGGAGAGCTCAAGCAGTAATTCTAGCAGTAAGAGCGAGTCTGTCGATGTTACACCCAACGCATTGATAGCCACTTTTCCACGAGCACCAGGCACATCTGACTCAGTCCGTATCAAGTGCAGGGAGATGCTGTCAAGTGCTTTGCAAACAGGAGATGATTACATTGCAATTGGTGCTGACTGCGATGAACTTGGAGCGCAGATTGAAGAATGTATCTTTTTGGAGTTCAAAAATACtgatatgaaatacaaaaatcgTGTACGGAGCCGAATCTCCAATCTTAAGGATGCAAAGAACCCCAACCTGAGAAGGAATGTGCTGTGTGGGAATGTGAGTCCAGACCGCATAGCAAAAATGACAGCAGAGGAAATGGCAAGCGACGAGCTGAAAGAGATGCGAAAGAATCTGACCAAAGAAGCCATCAGGGACCACCAGGTGGCCACTTCTGGGGGCACCCAGACTGACCTGTTCACTTGTGGGAAGTGCAAAAAGAAGAAGTGTACCTACACTCAGGTTCAAACTCGAAGTGCTGATGAACCGATGACAACATTCGTCTTCTGCAATGAATGTGGAAATAGGTGGAAGTtctgctgaagttgggggtcgTTCTCTGTGTTTGGAGATGTAGCTAAATTCCAGGACCACGTTTCTGTATCATGGACAACAATTTAATGGCGCACCTGATGTACAAAGCCCACAATAGATCCCATCAACCGTTTGTTTTCTTATAATGGTCCACAAACTCATGTCCTGTGTTTTAACTTGACGTTTAGCTAGGCCATAGGCCTTTGGACTATGATCAATGTtgttgaatttcttttttcttttaccatCACTTTTTATACGTAGTTAAAAATTTTGACAACATTCATATTTAGATAGTTTTGCTTTGCTCTAAAGAAAGCTAgtcaaaactatttaattttccTAGACAAACTTgcccattttaaaataaaaaaaaccaaaaacaactgCTTTTAGCGTATGTTTGCTTTTGGTAACGgctcaagatttttttttttttttttttaaactttgttcATTTGAAAGCTACTTTGAGTATCTTTGTCACTCtgaattatacatatttatatgcatgatCTACAAATTTTTACTGTGTACATGGCTTTTACTTTCAggagtaaaatgttttaaagattgA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006414 translational elongation biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17537 lncRNA upstream 178135 14136114 ~ 14185786 (+) False G11832
TU17582 lncRNA upstream 196966 14108155 ~ 14166955 (+) True G11856
TU17577 lncRNA upstream 199544 14140050 ~ 14164377 (+) True G11855
TU17578 lncRNA upstream 199544 14140050 ~ 14164377 (+) False G11855
TU17576 lncRNA upstream 213062 14131759 ~ 14150859 (+) False G11855
TU17629 lncRNA downstream 1598 14369688 ~ 14371834 (+) True G11894
TU17630 lncRNA downstream 3828 14371918 ~ 14375750 (+) True G11895
TU17635 lncRNA downstream 20895 14388985 ~ 14437409 (+) True G11898
XR_006252197.1 lncRNA downstream 127360 14495450 ~ 14497873 (+) True LOC122355240
TU17656 lncRNA downstream 191770 14559860 ~ 14603545 (+) True G11914
XM_043218310.1 mRNA upstream 12349 14348581 ~ 14351572 (+) True si:dkey-94e7.2
XM_043218319.1 mRNA upstream 12349 14348900 ~ 14351572 (+) False si:dkey-94e7.2
XM_043257257.1 mRNA upstream 90301 14262564 ~ 14273620 (+) True ankrd33bb
XM_043257245.1 mRNA upstream 101507 14245255 ~ 14262414 (+) True march6
XM_043257269.1 mRNA upstream 118977 14242673 ~ 14244944 (+) True atpsckmt
XM_043221254.1 mRNA downstream 11981 14380071 ~ 14410644 (+) True atp6v1h
XM_043221246.1 mRNA downstream 12004 14380094 ~ 14410644 (+) False atp6v1h
XM_043221250.1 mRNA downstream 12005 14380095 ~ 14410644 (+) False atp6v1h
XM_043255729.1 mRNA downstream 54146 14422236 ~ 14426212 (+) True oprk1
XM_043254943.1 mRNA downstream 60841 14428931 ~ 14432593 (+) True chmp5a
TU17566 other upstream 184306 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 184306 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1490776 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1490836 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 1737534 12623823 ~ 12626387 (+) True LOC122358236
XR_006252462.1 other downstream 408232 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 408232 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 1898953 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2664229 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2994155 17362245 ~ 17367861 (+) False sppl2

Expression Profile