RNA id: XM_043256794.1


Basic Information

Item Value
RNA id XM_043256794.1
length 2241
RNA type mRNA
GC content 0.46
exon number 8
gene id si:dkey-154p10.3
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 15256044 ~ 15260435 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTTTGACCTCACACATTTAGTTTAAACTAGTTAAAATGTCGTTGGTGCATGAAAATAGTGTTTAGATCTGTCAGTATGTTGAATAATATAGAAAATGGCACCTTTTACGCTGTATCTGTGTATAGTAATTACGCAATGGTCCCTAAATCGCATTTCCGAGCCCACAACACAAGCCAAGTAATTTAAAGATACAACGCTGGTTAATGCAGAATGGCTGGATTTAAAGATGCTTACCAAGATGTTCAGCCAGTAACCCTTCGACTTGCAGAAGAAAATGTCACTTCAAGCCTCTACTGTAGCTCAGCCGAGGGCATTGAAGCTCATTTGTCCACTTTAGTGGAAGTTTTCTTAGTTGAAATATACCGATGTAGAGTCTGTCAGTTTACCAGCAGCCAAAAAGCCAAGATTAGCCATCATGTCTTAGAAAGACATGATTCAGTGTCTCCTCATCTGCCATGTCTGGAGAAAGAGGATGAAGAGAGTTTGGGTGTAGGAATGAGGGttgatgatgaagaggaggttGACCACAACAGCTCTCCATATGACCTCGAGAGTGATCTCCATTCTGGCTCAAAAAGCAGTGATGATCAGATGGACATGGAGCGCATGTCCTTCCTCTTACCGATGTATGGCATGTTTCAAAACATCAGCCCACGATCATGTGACATTGGCCTGGGCTCCAACTCTGATGGCAACTTGCATGTGGCACAAACCTGTGAGGTAAGCACACTCTTTGAGGAGGATAGGCATGATGAGGACAGCGAGGAGGAACCTGTGTTTCAGCTGGAGGATGCTAGCACAGATCTAGCTGTTCCTTTGAACAGTGGAATAGACACAGAAATCCAGGATGAAGAGATGGCCCAGTCAGCTCATCTGATGACTCTTGGGTTGTGCAGAATTTCAAGCACTAAGTGTCAACCTCAGTCTGCAACCTCAGCAAAAAGCCTGTCCCATCCAGAAGGTGAACAGGATGGTGGACATGCCAACATGGATGCCGAAATGCAGAAGCCATCTGAGGAGGATGACGGATTGGCCTGCATCCTCTGTCAGATAGTAGTATCCAGTCGTAGCATGCTAGATGTGCACCTGAAATGCCATAATGGAGATCAAGGTTTTCGGTGTCCTCGCTGTGGTTGGGAATCAGAAGACTGGGATGATATGGAGCAGCACTGGAGAGGACATGGTAAAAGAAAAGGCTCAAAGAGGCATAAATGTAGCATTTGCCCCAGGACATTTAGGAGAGTTGACTCTCGTGACGCACATGAGGAAAGGCATAATCAGTGGCATCAGTGTCGGTCTGAGTCTGGGGGTCTGGTGCAGTGTTCTCTGTGCATGGAATGGTGCCTCTCAGGGAAGGAGTGGGAGATACACCAACAATGTCATTTTCAAGGAGGATTTAAATGTGTACATTGTGATTTCAAAGAGAAGTCATGGAAGAAGACCCTGAAGCATATTCACACTCAACACAAACAGCTTGACACAAGTAAGAAGAAAGAGGTCGCTCATAGCAGAGAAAACCAGCAACTTAACACATCCACCAAGTACCCAGAATGCTTGAGAAGGATGAAGCCAGAGTCGTGGTCCCAGGTTAGGAGGAACAGGGTGAAAAACAGGGCTGTGGCAAGGGAAAAAAGCAATGAAAGAGGAAAGGACAGAGTGGGACACCTGAAGTGTGACACATCTGTTGGGCGGAAAGAGTTCTGCTGCAACCTCTGTGACAAGAAGTTTTCTACCAAGATGACAATGCGGCGTCACATGGGCATTCATCAAGGAgataaaccatttaaatgtcCACACTGCCATTACTGCGCTCGTCTTAAAGCCTCGCTCATACAGCATCTCCGCGTCCACACAGGTGAGAAGCCATACAAATGTTCGCAGTGCTCCTATGCTTCTATTGACAGAAGCTCTCTGCGCCGACActtaagaacacacacacaagaaaagcCTTACCGCTGCCAGTACTGTCCTTACAGCAGCATCCAGAAGAAAAGCTTAGACCTCCATTCACGTCGTCATCACACCGGAGAGTCATTCCCTTGTCACCTGTGCCAGTATTCCACACCAGACCGCCAGCTGCTGGTGCGACACAAGAGGAAACATCACAGTGGCGAACAAACTGCAGCACTGGGGCAGAGGAAAAATTCTGGTTCCCAAACCGCACCTTCTCAAAGATCACGGACTTCCAAATGATATTTATGATTTCTAATAAaacttttcaattaaatttgaatatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18270 lncRNA upstream 3000 15252494 ~ 15253044 (+) True G12321
TU18267 lncRNA upstream 6795 15245312 ~ 15249249 (+) True LOC122357435
TU18164 lncRNA upstream 75790 15118457 ~ 15180254 (+) False G12255
XR_006252526.1 lncRNA downstream 238089 15498524 ~ 15500314 (+) True LOC122357737
TU18398 lncRNA downstream 415768 15676203 ~ 15678446 (+) True G12419
TU18414 lncRNA downstream 462651 15723086 ~ 15804921 (+) True G12432
TU18415 lncRNA downstream 471384 15731819 ~ 15741601 (+) False LOC122356092
XR_006252280.1 lncRNA downstream 471395 15731830 ~ 15742798 (+) True LOC122356092
XM_043256825.1 mRNA upstream 9728 15241797 ~ 15246316 (+) False LOC122357435
XM_043217271.1 mRNA upstream 15350 15238481 ~ 15240694 (+) True ccr9a
XM_043217249.1 mRNA upstream 20793 15230016 ~ 15235251 (+) True zgc:136930
XM_043217246.1 mRNA upstream 21189 15230006 ~ 15234855 (+) False zgc:136930
XM_043222099.1 mRNA upstream 33365 15214869 ~ 15222679 (+) True klhl18
XM_043256838.1 mRNA downstream 140 15260575 ~ 15262914 (+) True LOC122357442
XM_043256812.1 mRNA downstream 1526 15261961 ~ 15266205 (+) True opn4.1
XM_043254484.1 mRNA downstream 6694 15267129 ~ 15269496 (+) True tmem53
XM_043218133.1 mRNA downstream 100319 15360754 ~ 15471835 (+) False rnf220a
XM_043218174.1 mRNA downstream 100321 15360756 ~ 15472750 (+) True rnf220a
XR_006252462.1 other upstream 473067 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other upstream 473340 14776322 ~ 14782704 (+) False ackr4a
TU17566 other upstream 1076429 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 1076429 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 2382899 12867983 ~ 12873145 (+) False rnf152
TU18526 other downstream 1006608 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 1771884 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2101810 17362245 ~ 17367861 (+) False sppl2
TU19352 other downstream 2306406 17566841 ~ 17567916 (+) True G13114
TU19349 other downstream 2346817 17607252 ~ 17608092 (+) True G13111

Expression Profile