RNA id: XM_043260467.1


Basic Information

Item Value
RNA id XM_043260467.1
length 3417
RNA type mRNA
GC content 0.49
exon number 10
gene id colec12
representative True

Chromosome Information

Item Value
chromosome id NC_056700.1
NCBI id CM032069.1
chromosome length 25613461
location 14643504 ~ 14668425 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTCCAGATGCGGTTCTGCACGTTCAGAGTTTCGGGGAAAAGgaggctgctgctgcttttcACCTGGTTTTCCTTTAAGAGGTTCAGTTCGTGTAGAAAACAAGTGGACTAACAGACACCCTACGGACTCCCCGATTTCTCTCTGGTTCTCGGGTTGCAGCCAAAAGGCAGAAGAGGAGGCATCCTCGCTCACCTCAAGTGAATTTCCATCGCGAACGCGTTctcatggagagagagaaaaagtttgCGTTTTGAGCTGAAGTTTGTAGCCTGCGACTCATTAAACGCCGTGTCCGCGACTTTTCCCCTTTTGCTGTTTGAATTTCTCTTAAGTTTAGCGTCGGTCGCGGGGACTGAGGAGGTTATAAACATTCTGCGCGTGTTTCAGGTGGAATATTCGCGCCTGTGAAAGTTCAGCGTGGAAGCGCGCGAGCGCGATTCTTTAGTCCGCGCTTATTGTCATGAGATTGATGTGAACGTTTGGCTCGCGACGGAACGGTTTACCTCAGTTTTACCACAATGAAGGACGACTTCACTGATGAAGAGGAAGTGCAGTCTTTTGGATACAAAAGGTTTGGTATTCAGGAAGGAAGTGAAtgcactaaatgtaaaaatgactggGCCCTGAGGGTGGCGATTGCTCTCCTGTACGTACTTTGTGCGCTGCTCACCATAGCTGTGGCTGTGCTCGGATACAAAGTGGTCCAAAGAATGGATAATGTAACGGAGGGTATGGAGAATTATGGAGGGAAGATCATGGCTGTAGAGACAGATCTTAAGAAACTTGATGATCAAACGGGAGAGAAGTCAGAAAACGCCTCCAGTGAACTTCTGTCATTCAAGATGGAAATTCAGACGTTGCAGAAGCAGCTCAGTGACGTTGCTGTGAAGGCTTCTAACAACAGAGCTGTTCTCGATGAGCTACGGCTAGCTGGTGAGGACATGCAGAGTGGACATCACTCACTGCGAGATCTGTTGGAGAGCAATGCCAATGTCATTAGCAAAGTAAACCGCACCTTAAACTCATACAGCAACTTAATTGACGGACTAAAGACAGACACGGCTCGGCTCCAGATAGACCTTCAAGTGCAGACGAGCGAACAGGGCCGAAACACGCACAGCATCAGCACTCTGAACTTCACACAGACCCAGCAGAGGAGCCTCATCAGCTCCCTCCAGAGGTCAGTGGAGGACACCAGCCAGGCTGTCCAGAAGCTTAAGAACGACTATCAGAGCCTTCAGCAGGTGGCTAGGCAGACCAAAGCAGATGCTGACTGGCTGAGGGAGAAGGTCCAAAACCTTCAGGCTTTAGCTGCTAACAATTCAGTGCTGACTCGGTCTAACAGTGACGCTCTGGAGGATGTGACCTCTCAGCTGAACTCGCTCTCAGAGCAGGTGCAGAACGCCTCAGGCATCGCTGACAGCCATGAGCAGAGCATCCGTGAGCTCATGGACCAGCAGCGAGACCATGACAATGCCACCTCTTCGAAGTTCGATGCGCTAGAGGCACGGCTTGACCGCAACGAGGCGGAAATGGACTCCATAACAGGGAATGTAAGCTTCACCACGCAGCTGCTCGGAGTCATCAGCGTGGATCTGAATGGTCTTCGCACCTGCTCTGAGACGGTGGCCCAGCATTCAGACCTGCTGGTGGGGCTGAACAGCAGTGTGACAGAAACCAGAACCGACAACACAGAGCTCAAAACCCAGCAGGAAGAACTCGCCGCCAGGCTCGACAAAGAGGTCAGCAGCCTCTCCATAGTCATGGAGGAAATGAAACTGGTCGACAGCAAACACTCGCAGCTCATCACGAATTTCACAATCCTTCAGGGTCCTCCTGGTCCAAGAGGTCCTCGCGGAGACAAAGGGTCCCAGGGGCCACCTGGCAAAGCTGGCCAGAAAGGTGAAAACGGTGAAAAAGGAGCACCTGGTGTTGCTGGGCCTAAAGGAGAAAAGGGTCCAGCTGGGCCTCCTGGTGTACCAGGAATGAAAGGGCCACCTGGATCAAGAGGAAGCACTGGGCAAAAGGGTTCACGAGGATCTGGGGGCAGGGCAGGGCCTTCGGGAGAGAAAGGTGACCCTGGTATACCTGGGCTACCTGGAAGAGATGGTCAACCAGGTCCTCAAGGGCCACAAGGGCCGCAAGGACTCAGAGGGCCAGCTGGACCAGCTGGGCCTGCAGGACTGGAAGGACCCCGTGGGCCCATTGGCCCCATTGGTCCACCTGGACCTCCTGGATTACCAGGACTTACTGCACCAGTAGTTGTGCCCCCGGTAGATCCGCAAGGCTTTGTCAACCGCCAGGTAGCACCACCCCCTACAAGTGCTCCAGGGTGCCCACCTCAGTGGAAGAGCTTCAGAGACGATTGTTACTACTTCTCATCAGATAAACTGAACTTCGATGAAGCGAATGAAAGATGCAGCAACAAAAGTTCAACTATGCTGATTATCAATGATGAAGACGAGCAGCTCTGGATAAAGAGGCAGATTTCTGGAAAGGGCTACTTCTGGCTGGGCCTCACCGACAGCGCTGTTGAAGGCACCTGGAGATGGGTGGACGGGAGCCTGCCCAGCTATACGAAATGGAAGCCTGGACAGCCTGATAACTGGAGCCACGGTCACGAGGCTGGAGAGGACTGTGCCGGGTTAATACACGAGGCCAGCTGGAACGACTTTTTCTGCATAGAACGCAATCTTTTCATTTGTGAACGACCGAATGAATCCAAAGTTCCAGTTTTATAGCACCTGTTGTGAGCAAACAGAGAATATCGGATAAGACAATCGCAGAGACTTCTGTTTTCTGTATCCTCCCTTAAAGCACGAACGATTGCTTTGTTCGGAGAGCCACATGTGTGACGGACACAAAAGTCATCGACAATCACGACTGAAGACTGCAAACTATACAATACACACTGATCACCAGTCACGTTAATGTTTAGATAAGTGAAAACGCTGTAATGTATTGTAATCGTGTGATTGTAAATACCTGTGTCATTAACAAAGCCGATGCCACATTATTCCAGTGCAATACAATGACGCTTTGTagctgcttttattaaaatgaagctTTTAACAGCCCACCGTAAAGCTACACTTaacatgttaatgttttaataactaTAATCCAAAATTTGTTGACAGAGTTTTGCATCTTACATCTTGGACATcattaatgtgattttatgaataaagttttgaattttataaatatttgattatgcAGTAGCTATGTATAAAATAGTTGTGTATTtgaatacatgtacatttatgtaGTTATCATCAAAGACCAtgtttttatctgaaataaaatatagttgGTATTTTTCAATATGCTTTATGTTGAAGTCCTTTTGATGACAATAATGCAACATCAACTGTAACTGCTTTACTTAGAATTACTTGCCAGTATGTATTGAt

Function

GO:

id name namespace
GO:0001570 vasculogenesis biological_process
GO:0005581 collagen trimer cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K10062 COLEC12; collectin sub-family member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17661 lncRNA upstream 5699 14637589 ~ 14637805 (+) True G11918
TU17660 lncRNA upstream 6735 14636444 ~ 14636769 (+) True G11917
TU17656 lncRNA upstream 39959 14559860 ~ 14603545 (+) True G11914
XR_006252197.1 lncRNA upstream 145631 14495450 ~ 14497873 (+) True LOC122355240
TU17635 lncRNA upstream 206095 14388985 ~ 14437409 (+) True G11898
TU17912 lncRNA downstream 80792 14749217 ~ 14749651 (+) False plxdc2a
TU17944 lncRNA downstream 154736 14823161 ~ 14826945 (+) True G12135
TU17945 lncRNA downstream 158626 14827051 ~ 14829486 (+) True G12136
TU17957 lncRNA downstream 188947 14857372 ~ 14886069 (+) True G12143
TU17961 lncRNA downstream 197773 14866198 ~ 14878772 (+) False G12144
XM_043261377.1 mRNA upstream 7820 14609754 ~ 14635684 (+) True yes1
XM_043219660.1 mRNA upstream 162656 14461913 ~ 14480848 (+) True lpin2
XM_043219653.1 mRNA upstream 162656 14465469 ~ 14480848 (+) False lpin2
XM_043219618.1 mRNA upstream 181791 14439752 ~ 14461713 (+) True myom1a
XM_043219628.1 mRNA upstream 181791 14439752 ~ 14461713 (+) False myom1a
XM_043260478.1 mRNA downstream 977 14669402 ~ 14677307 (+) True stam
XM_043257043.1 mRNA downstream 10024 14678449 ~ 14681332 (+) True tmem236
XM_043260008.1 mRNA downstream 14465 14682890 ~ 14709199 (+) True cacnb2b
XM_043260016.1 mRNA downstream 14465 14682890 ~ 14709199 (+) False cacnb2b
XM_043260024.1 mRNA downstream 22762 14691187 ~ 14709199 (+) False cacnb2b
TU17566 other upstream 463889 14175364 ~ 14179615 (+) True G11854
TU17573 other upstream 463889 14175364 ~ 14179615 (+) False G11854
TU17265 other upstream 1770359 12867983 ~ 12873145 (+) False rnf152
TU17266 other upstream 1770419 12867983 ~ 12873085 (+) False rnf152
TU17183 other upstream 2017117 12623823 ~ 12626387 (+) True LOC122358236
XR_006252462.1 other downstream 107897 14776322 ~ 14782977 (+) False ackr4a
XR_006252465.1 other downstream 107897 14776322 ~ 14782704 (+) False ackr4a
TU18526 other downstream 1598618 16267043 ~ 16268797 (+) True G12531
TU18915 other downstream 2363894 17032319 ~ 17037297 (+) False golim4b
XR_006252905.1 other downstream 2693820 17362245 ~ 17367861 (+) False sppl2

Expression Profile