RNA id: XM_043235732.1


Basic Information

Item Value
RNA id XM_043235732.1
length 2040
RNA type mRNA
GC content 0.51
exon number 16
gene id arhgap17b
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25346784 ~ 25374498 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACTGCACTTCCTATTTCCTCGGCGTTACTGCTGCCTACTGACTAAACCAGAAATCGAGAGGATGAGAAACGAAAGGAGCACGTCCGACGCGCCGTGTATAAATGCACGCGAGCAGTAAATGACACAGACAGTCCGGTTCTGGTCCAGTTGTGCGCGCGCAATGGGAGCGTCGCGCGCGCGGGCGGCGGTTTGATCGGAACGGCGACTTCTCCAAGTTTCACACGTTGGTGGACGAAGACGAATCGAGATGAAGAAGCAGTTCAACCGCATGAAACAGCTCGCCAACCAGACCGTTGGCAGaGCAGAGAAGACAGAAGTACTGAGTGACGACCTTCTTACGATTGAGCGTCGCCTTGAAAATATGCGATTGGTCTCGCATAATGTGCACAAGAAGATGGTCATGTGTCTGCAGGGCAACGTGGGCTCGGATGCGGACAAGAGACATAAAAAGCTTCCTCTCACAGCCCTTTCACAATCCATGGTGGATGGAGTAAGTCAGCTCGGAGACGAGTCCCTCATCGGGAAGATGATGGATGTCTGTGGAGAAGCTGAAAACAAACTGGCCTTGGAGCAGAGCCAACACGAAGTTCAGCTGGAGAAAGACATTCTGGAGCCTCTCAGCCAGCTGGCGGAGGTGGATATCCCTAACATCCTGAAGCAGAGGAAACATTTAGCCAAGCTTGTGTTGGATTTTGATTCTGCAAAAGCCAGGTATTTGCAGGCCACAAAGGCGTTTCCGTCAGCTACAAACGCTCAAGCAATGGCTGCCAAGGTTGACACACTTAAGGAGGAGATGGACGAAGCTcaaaacaaaatggaaatatgcAAGGATCAAGTAGCAGCAGATATGTACAACTTTTCCTCCAAGGAAGGAGAATATGCTCGCTATTATGTGCTGTTGTTAGAAGCTCAAGCCGAATACCACAGAAGAGCTTTGGCGTCCATCGAGAGCGTCCTGCCCACCATACAGTCACAGCAAGATAAATGGACCGAGAAGCCAGCGTTTGGCACGGCTCTGGAAGAACATCTGAAACGCAGTAGCCGAGAGATCGCTCTGCCCTTAGAGGCCTGTGTTATGATGCTACTGGAAACCGGCATGCACGAAGAGGGTTTGTTCCGCATCGCCGCCGGAGCCTCTAAACTCAAGAAGTTAAAGGCGGCACTGGACTGTTCCACTTCCCAACTGGAGGAGTTTTACTCGGACCCTCACGCTGTAGCCGGAGCCCTGAAATCTTACCTGAGGGAGCTGCCTGAACCTCTGATGACCTACCAGCTGTATGAAGAGTGGATCCAAGCCTCAAATATCTCTGACCCTGATAAGAGGCTTCAGGCGCTGTGGGTGGTGTGTGAGATGTTACCAAAGGCCAACAAGACCAACTTCAGGTACCTGATGAAGTTTCTCGCAAAGCTTTCTTTGGAAAGCGACATAAACAAGATGACGGCGAGCAACATCGCCATCGTACTGGGACCCAATTTACTGTGGGCCAAGACAGAGGGAAGCCTGGCTGAAATGGCAGCTACTACCTCCGTCCATGTCGTGTCTATAATAGAACTGATAATCAACCACGCTAGCTGGTTCTTCCCTGAAGaTGTGGACTTCAACGTCTCAGGCATGTTTGCTATGCCTGGGTGCCCAGGAACCCCTGACTCCGAAGCGGGGACCATAGACAGGAGGCGCCCGGGCAGCCAGGGGTCGTTCGATTCTGACACGCCCCGCAAAGACAGGTACAAGTCTCATCCCCGCGCTTACAGACATGACTCCAACTCCACAGTAGTGTCCGCGTCCTATGTAGTGGCCAGTGAGTCCGTCACAGTCAAAGCGGACGGCCTGAGCCCAGAGCTGGGGGCTGTTTAGACGCATTCCTTTCAAACGACACATGCAACTTTCTCagccatgtttgttttgtggttttgcttcatttttcttccagttctttttttttttttttggtttggctttgtttgctttgttttactTCGGTTTTTGTCAACAGTTGCTTACTGTATgctttctgaaataaataaaactttatgcTCATA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34210 lncRNA upstream 79629 24957311 ~ 25267157 (+) True G23031
TU34190 lncRNA upstream 256352 24730359 ~ 25090434 (+) True G23027
TU34230 lncRNA upstream 258816 25079692 ~ 25087970 (+) True G23044
TU34188 lncRNA upstream 536823 24721526 ~ 24809963 (+) False G23026
TU34184 lncRNA upstream 536823 24754538 ~ 24809963 (+) True G23026
TU34290 lncRNA downstream 4585 25368277 ~ 25374497 (+) False arhgap17b
TU34295 lncRNA downstream 15536 25379228 ~ 25382913 (+) True G23077
TU34296 lncRNA downstream 28826 25392518 ~ 25394254 (+) True G23078
TU34258 lncRNA downstream 48226 25411918 ~ 25447270 (+) False G23061
TU34264 lncRNA downstream 48226 25411918 ~ 25447270 (+) True G23061
XM_043235162.1 mRNA upstream 6895 25336185 ~ 25339891 (+) True cbx8a
XM_043235159.1 mRNA upstream 12921 25327720 ~ 25333865 (+) False cbx4
XM_043236009.1 mRNA downstream 60251 25423943 ~ 25430065 (+) True narfl
XM_043236008.1 mRNA downstream 60311 25424003 ~ 25430065 (+) False narfl
XM_043234952.1 mRNA downstream 72471 25436163 ~ 25437150 (+) True fahd1
XM_043233824.1 mRNA downstream 78918 25442610 ~ 25444546 (+) True ndufb10
XM_043233823.1 mRNA downstream 86703 25450395 ~ 25454405 (+) True kdelr2a
TU34203 other upstream 360869 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 535209 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 536823 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 816223 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 897497 24446878 ~ 24449289 (+) True G22953
TU34266 other downstream 48226 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 81607 25445299 ~ 25447270 (+) False G23061
TU34364 other downstream 212284 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 249544 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 249582 25613274 ~ 25615293 (+) False LOC122336634

Expression Profile