RNA id: TU239901


Basic Information

Item Value
RNA id TU239901
length 389
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G162020
representative True

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 10446039 ~ 10446427 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATCATAACGACGTGACTGGAATGAGGGCCGAGCGCAGCAGCTGCGGCGGTTTCATGTGAGCTGAACGTGTGGCAGGTGCAGTGGTAGGATTTTGAGCCAGAGTTCACCATCCTTCCTCATGAATCTGCTCTTCTGTAAGAATCCAAACGCCTGATGAATAGAGAACACCTGCAGGCTCATTTGACCAGATGACCAGTCATGACTGCTGTATTTCCTTTACCACGTTGGAACACGTTTTCTGCCAGAAGCGTTTTCATAACTGCTTCCCAAGTTTCATTTTCTACAGTCGTACCAGTTATGTATAGATTATGACAGAAACCAATCAGATATTTTTACATGACAGTAGTGGAGCTGGAACTTTCCAGGATTTGCTTTCCAACATTGTTG

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0099528 G protein-coupled neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04742 Taste transduction
ko05032 Morphine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006247923.1 lncRNA downstream 104676 10328669 ~ 10341363 (-) True LOC122329558
TU239853 lncRNA downstream 151881 10290175 ~ 10294158 (-) True G161985
TU239843 lncRNA downstream 231943 10211151 ~ 10214096 (-) True G161981
TU239832 lncRNA downstream 287224 10135447 ~ 10158815 (-) True G161973
TU239685 lncRNA downstream 598179 9847393 ~ 9847860 (-) True G161878
TU239979 lncRNA upstream 107071 10553498 ~ 10554047 (-) True G162081
TU239999 lncRNA upstream 485093 10931520 ~ 10987703 (-) False dpp6a
TU239996 lncRNA upstream 563078 11009505 ~ 11010247 (-) False dpp6a
TU240009 lncRNA upstream 673279 11119706 ~ 11149416 (-) True G162102
TU240127 lncRNA upstream 1040503 11486930 ~ 11494948 (-) True G162193
XM_043225714.1 mRNA downstream 9576 10366173 ~ 10436463 (-) True myo3a
XM_043225715.1 mRNA downstream 32582 10366173 ~ 10413457 (-) False myo3a
XM_043226883.1 mRNA downstream 80430 10347688 ~ 10365609 (-) True gad2
XM_043226615.1 mRNA downstream 119056 10309244 ~ 10326983 (-) True LOC122329925
XM_043226696.1 mRNA downstream 143968 10294776 ~ 10302071 (-) True pdss1
XM_043225953.1 mRNA upstream 1467 10447894 ~ 10450508 (-) True LOC122329611
XM_043225949.1 mRNA upstream 5132 10451559 ~ 10458476 (-) False zgc:174877
XM_043225948.1 mRNA upstream 5132 10451559 ~ 10458476 (-) True zgc:174877
XM_043225950.1 mRNA upstream 6900 10453327 ~ 10458476 (-) False zgc:174877
XM_043225952.1 mRNA upstream 12186 10458613 ~ 10464895 (-) True anxa13
TU239881 other downstream 32571 10396084 ~ 10413468 (-) False myo3a
TU239863 other downstream 159431 10280797 ~ 10286608 (-) True G161992
TU239703 other downstream 513237 9931295 ~ 9932802 (-) True G161893
TU239150 other downstream 3039356 7390095 ~ 7406683 (-) False pard3aa
TU238971 other downstream 3349200 7090532 ~ 7096839 (-) False ralaa
XR_006247939.1 other upstream 5132 10451559 ~ 10458476 (-) False zgc:174877
XR_006247941.1 other upstream 7571 10453998 ~ 10458476 (-) False zgc:174877
XR_006247940.1 other upstream 7573 10454000 ~ 10458476 (-) False zgc:174877
TU240083 other upstream 905634 11352061 ~ 11352859 (-) True G162152
TU240376 other upstream 1810390 12256817 ~ 12271146 (-) False mppe1

Expression Profile