RNA id: XM_043226459.1


Basic Information

Item Value
RNA id XM_043226459.1
length 2834
RNA type mRNA
GC content 0.45
exon number 5
gene id pigm
representative True

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 5991972 ~ 5995663 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTCAGGACAGGGAAGTAGGGTTTTCAGGAAGCGCGATTCCgtgttctctctctgtgtgtgtgtgtgtgtgtgaaagagagagagagagaatgagagtgagtgagagagtgtgctGTGATGGATGCTCAGCTGTGTTTGATGTTAAGCGCCGCGTTTCTCGTCCGCCTTGCGCTGATGTGTTTCGGTGTTTATCAGGATCAGAATCTGCAGCTCAAGTACACGGATGTGGATTATCACGTGTTCACCGACGCCTCCAGATTTATCCTACAGgGTCGCAGTCCCTATGACAGATCTACGTTTCGTTACACTCCTCTGCTGGCTCTGGTTCTGGCTCCAGGGGTTCTGCTGAGCTCTCTCTGTGGGAAGCTTCTGTTCGTGGGCTGTGATCTTCTGTCGGCTCTCCTGATGTTCCGGCTGCTGGTTCTGCGCGGCTCGTCCCGGAGATCGGCGAGGCTCCTCTGCGGTCTGTGGCTGTTTAACCCGCTGACCGTGGCTGTGTCCACCCGCGGGAACGCCGAGTCTCTGCTGGCCGCTCTGGTCTTGTCCTCTCTGCTGTGTCTGGAGTCCAGGAGACAGACGTCTGCAGCGCTGCTCTTCGGTCTGGCCGTCCACATGAAGATCTACCCAGTCACTTACGCGCTGCCCATCGCGCTGTCTCTGACCAGAGCGCCGTCCCGCGGCCGAGGACTGATCCGGAACCTGCTCCGGTGCATCAGTGGGGATCTGCTGCGGTTCGCGGCTGTTTCTGGAGTCGTGTTCTTCGCTCTGAACATCACCTTCTACTGCATGTACGGCTGGGTTTTCCTCCAGGAGTCTTACCTGTATCACCTGACTCGCAGAGACATCCGTCACAACTTCTCTCCGTACTTCTACATGCTGTACGTGACGGCGGAGCGTCCCTGGAGCGGCGCTCTGGCTCTCGTCTGTTTTCTGCCTCAGATGCTGCTGCTGTCTCTGGCCTCGCTGGCCTTCCGCTCCGATCTGCCCTTCTGCTGCTTCATACACACCTCCATCTTCGTCAGCTTCAACAAAGTCTGCACTTCACAGTATTTTCTGTGGTATCTGTGTCTGCTGCCGCTGGTTTTGCCTCGGCTGACTCTGAGCGGGAGACGAGGCCTggggctgctgctgctgtggttTGTGGGACAGGCGCTGTGGCTGTCCCCGGCGTATTATCTGGAGTTCGAGGGCCGGAACACTTTCACACTCATCTGGATCGCCGGGCTGCTGTTCCTCCTCATCAATTCTTTCATACTGGGACAAATCATCTCCCATTACAGACCCCCAGAAGCCCATGTGAAGAAAACAGACTGACGGACGCCTGCGAGAACACTGTCGCTTCACACACCGGATACGTGAGATGATTCAGCCGAACACTAGATGTCGCCCAACAGCAGATCTCCAGATGGACGGCACACTTCAACTGATCTCATGTTGAACAAGTGAGGGATTTCTCAACCCTTTACATTTGATGTCGCAGATGAGCTTGTAAATGATGCTTGTGTCTCTGAGGAGATTAGTGAGAGTGTGAATGAAGACGAGCCCACAGGAAGTGCTGACTGACGGGACGCAGGACGAGAACAAGCTCAGCGTTAAACAGGATTAAATCCTCTCTGCTGTGAAGCTTGAAAAATCTTCAATGTTCTggtaaacatttttgcaaaatgcTGGTCACCATTATTGAATGAACAGAAGCAGATCTGGTTATATCTCTTCTACATATAACACAGTCTTATTAAAGTGTGGAGAAGGAGAATGTGAACCAGACTATTCATAGTAAAACACGAACAGCACATGAGCATGGTCTTTTTGTCatacaagatttttatttttataaaagtaataaatataacagCAAGACCCACATTTGATTGTTGCTGCTTTGCAGCTACAAGCTTgtgtaacacattactgtatcttctgttaatatttattgcCCATATTGAATGCCAGTGGCAAAACGTCACGTTAAAATCCTTCCTGAAAAAGTGCAAAAGgccattaaacaataaatacaagtTATTGATACAAATGAACCTTCCAGAAACGGCTTGTCAGACGCGAGGACATCACGCCTCGGCAGGCTTTCTTTCGCTTAACTtttaacgtttttattatttaatacaattaaacagTAGTTTTATATAAAGTCAAAGTTACAAGCTCTAAACTTCAGAGCTGTGCTctattaaattcataaaatgtttggCATTCTTATCAATGCTGAAGTGAATTTAGCATCAAAATATTCAAGAGCCTAAATATTTAaccattatgttttatttctgggCTGCTTCAACAGTTTTTTTCCACCTCTTGGCTATTTATAGACGATATATAAGAACATTCCTGTCATTTCTCCGGCTGATATCTGAACACAAACAGATGGAATCCTTCAGTTTTTATActtctaaataattaataaacatgcagatgaaatgctttaaaaaacagCTCATAAACCGTTGATTGCAATGATATAACagaagttcattttaaatgaaataatttgaatatttgtttgtttttgtaatttgtgtgttagtagtttttatttgtccATGTTTGCTGAACAAACTGGGAAAGAAATATTAGCCTCACTACACAAAAAGTGCTTAGAAGAAAATATAATGGAAGCTCACCAAACAAAATCTTAACAACAGCGCTGCTACACTTAGAGAAAAACTTCACTGCAAGAAATGATTGTCTTAGTATCTGTGTCCTGTTTTCCTGTATAagaaactaaatgttttaataatctgcCAATCGGTTCAGCAAGAAATAACATGCTTCTTGTTagaagtatatttaaataaaggtgcctTGACTTGT

Function

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K05284 PIGM; GPI mannosyltransferase 1 subunit M

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238569 lncRNA downstream 183329 5774590 ~ 5808643 (-) False G161076
TU238571 lncRNA downstream 183329 5782595 ~ 5808643 (-) False G161076
TU238568 lncRNA downstream 183329 5803319 ~ 5808643 (-) True G161076
TU238599 lncRNA downstream 197714 5792609 ~ 5794258 (-) True G161093
TU238587 lncRNA downstream 263357 5727559 ~ 5728615 (-) True G161088
TU238659 lncRNA upstream 2629 5998292 ~ 6002580 (-) True G161140
TU238660 lncRNA upstream 2629 5998292 ~ 6002580 (-) False G161140
TU238667 lncRNA upstream 19552 6015215 ~ 6015793 (-) True G161146
TU238681 lncRNA upstream 67950 6063613 ~ 6064079 (-) False LOC122329398
TU238739 lncRNA upstream 310603 6306266 ~ 6307192 (-) True G161191
XM_043225826.1 mRNA downstream 67854 5921492 ~ 5924118 (-) False hus1
XM_043225825.1 mRNA downstream 67854 5921492 ~ 5924118 (-) False hus1
XM_043225824.1 mRNA downstream 67854 5921492 ~ 5924118 (-) True hus1
XM_043226604.1 mRNA downstream 73007 5909483 ~ 5918965 (-) False LOC122329919
XM_043226606.1 mRNA downstream 73007 5909544 ~ 5918965 (-) True LOC122329919
XM_043226800.1 mRNA upstream 15075 6010738 ~ 6013746 (-) False rmdn1
XM_043226799.1 mRNA upstream 15075 6010738 ~ 6013742 (-) True rmdn1
XM_043226801.1 mRNA upstream 15075 6010738 ~ 6013737 (-) False rmdn1
XM_043226803.1 mRNA upstream 15825 6011488 ~ 6013751 (-) False rmdn1
XM_043225600.1 mRNA upstream 55622 6051285 ~ 6060538 (-) True LOC122329399
TU238518 other downstream 568951 5372155 ~ 5423021 (-) False rheb
TU238519 other downstream 568951 5372155 ~ 5423021 (-) False rheb
XR_006247943.1 other downstream 701550 5287164 ~ 5290422 (-) False LOC122329620
XR_006247942.1 other downstream 701550 5287164 ~ 5290422 (-) False LOC122329620
XR_006247970.1 other downstream 1078471 4897067 ~ 4913501 (-) True ttc21a
TU238658 other upstream 438 5996101 ~ 5996690 (-) True G161139
TU238686 other upstream 70942 6066605 ~ 6086737 (-) False LOC122329398
TU238691 other upstream 105081 6100744 ~ 6120887 (-) True LOC122330195
TU238790 other upstream 400508 6396171 ~ 6470101 (-) True G161224
TU238949 other upstream 949523 6945186 ~ 7005408 (-) False G161327

Expression Profile