RNA id: XM_043239652.1


Basic Information

Item Value
RNA id XM_043239652.1
length 1801
RNA type mRNA
GC content 0.44
exon number 10
gene id tmprss4b
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 14010323 ~ 14014376 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTAAAAAAGTATCTAGTGAGCTGCTAGCCATTTGTATGAAAGGAACCCTCTTGAGATTCACTAGGTAGAACTACGAGATAATATTAAACCATTCTTAATATATTTAGCCATACAACCAGTAAAATCTACAGTTTTGGCTAGATTTCTGTCTATCAGTTTAATTCTCTGGTTCTCATGGCCCTGAGGCTGAAGCGAAGGCGAGAATTGAGCACACTGAGGACCGAGGAGAGCAGAGCACGCTGGAGGTTGACCGTTATCACTGTGTGCTGTGTGCTAGTCATACTAGCGACCTTGATAGTGGGCTTGTATTTTAcCATTAAGTTAGTGAATAGCAAGTTTTTCTTCTGCTCTGGCTCACTGAAGTTCATTTCAATAGAAAAAGCATGTGATGGAAAGGCTAACTGCGCAGGTGGTGAGGATGAAATCACGTGTGTATCTAAACTGCAGACCAATGACACGTATCCAGTTAGGCTGATGGGGGACAGACTGGTCCTGCAGGTGTTTATTAATGAAGGTGGATGGAGAACAGTGTGTGCTGATAACTGGAGGACAAAGCACACGCGGTTAGCCTGTAAACAACTGGGTTATACAGTGAGTCCACGAAGTACACGTGTCCCGGTAAAAAGTCTGCTTTTCAACCctcaaaatgcatttgctacAGTCAGCAATGACTCCACACACTCTGACATTCAGAGTTTCCTCTCAGTCAGTGACAAATGTTACTCTGGCTCAGTGGTATCTGTTTCCTGCTCAGACTGTGGAGAGGTGGTGGGAGAGGACCGTATTGTTGGTGGGGTGGACACCGCAATCAAACACTGGCCGTGGCAGGTTAGTCTTCAGTGGAACTACCAGCATGTTTGTGGAGGAGCATTGCTTTCCAAGTACTGGATCATATCAGCTGCTCACTGTTTCACAGGCCGGACACGAGACCTGAGTCAATGGACTGTGGTGTTGGGCCAGACCGAAATGGCAGGATCCAGGGGTGTTGGCGTAGAGACAATTGTTGTCCACAATAACTACAGTCGCTTGAGTAATGACTTTGACATCGCCATGCTAAAACTCACTTGGCCTGTCACTGTTGGGGAATCGATCGTGCCAGTTTGTTTACCCCCACACCAGCTATCTGTGAAGGACATGCTTGTGGTGACTGGGTGGGGATTGCTCAAGGAGAAAGGTGAGCTGCCCTCTGTGCTGCAGAAAGCTTCGGTGCCCCTGATCGACAGGTCAGAGTGTTCCAAGCCTTCTGTTTACGGTTCTGCCATAACTCCCAGAATGCTTTGTGCTGGATTCCTCAAAGGAAACATAGATGCGTGTCAGGGTGACAGTGGGGGACCGCTAGTGTACCTTTCATCTCGCTGGCAGTTAATGGGTATAGTGAGTTGGGGAGTTGGCTGTGCACGCGAGGGAAAACCTGGAGTATATACCGATGTTAGTCAACTTCTCAACTGGATTTACACTGTAATGGAAGtatatttcacataattttgcacattaatatataaggaaaatatatttccatACTAAATGTTATGTTTCAGAGACATCCATTAGAAGGTAAACCATGGATACGTAACTCAATGCTTTTGTGACAGGAGGAGAAACAAATCTCCTCAGAGTACAGAAATCTGTGTTCTTGAATGTAGATGTTGTTCCATTTTATTGACAAAACTGTCAAGTCATGCTTTTTATAGACTCACTATTAACTCACTATTCCTGTTAGTCTACTGTATGTTCATTATaaagctgttttaatatttttctgaccaaaaacaaagaaaaaaataaaataataaagctctTA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
K01312 PRSS1_2_3; trypsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53657 lncRNA upstream 2921 14005771 ~ 14007402 (+) True G36408
TU53655 lncRNA upstream 6792 14000526 ~ 14003531 (+) True G36406
TU53654 lncRNA upstream 9986 13999100 ~ 14000337 (+) True G36405
TU53521 lncRNA upstream 35564 13974532 ~ 13974759 (+) True G36332
TU53340 lncRNA upstream 277867 13731969 ~ 13732456 (+) True G36198
TU53675 lncRNA downstream 32401 14046777 ~ 14047494 (+) True G36420
TU53795 lncRNA downstream 307180 14321556 ~ 14322681 (+) False G36503
TU53796 lncRNA downstream 309975 14324351 ~ 14326754 (+) True G36503
TU53787 lncRNA downstream 318692 14333068 ~ 14335183 (+) False LOC122345214
TU53790 lncRNA downstream 318692 14333068 ~ 14337765 (+) True LOC122345214
XM_043238331.1 mRNA upstream 24617 13984369 ~ 13985706 (+) False ins
XM_043238328.1 mRNA upstream 26595 13978210 ~ 13983728 (+) True panx1b
XM_043238330.1 mRNA upstream 28021 13978210 ~ 13982302 (+) False panx1b
XM_043238520.1 mRNA upstream 33303 13975414 ~ 13977020 (+) True epd
XM_043239845.1 mRNA upstream 45284 13944782 ~ 13965039 (+) False myo1ca
XM_043238797.1 mRNA downstream 19071 14033447 ~ 14037169 (+) True pafah1b2
XM_043238796.1 mRNA downstream 24594 14038970 ~ 14041059 (+) True apoa1a
XM_043238507.1 mRNA downstream 42887 14057263 ~ 14059780 (+) False LOC122344888
XM_043238508.1 mRNA downstream 42888 14057264 ~ 14059780 (+) True LOC122344888
XM_043239092.1 mRNA downstream 74055 14088431 ~ 14092482 (+) True si:ch211-284e13.5
TU53623 other upstream 24617 13984097 ~ 13985706 (+) True ins
XR_006251084.1 other upstream 1203107 12803952 ~ 12807216 (+) False LOC122346073
TU52846 other upstream 1305082 12703371 ~ 12705241 (+) False iscu
TU52818 other upstream 1494215 12514076 ~ 12516108 (+) False si:ch211-225b11.4
TU52593 other upstream 1754651 12249138 ~ 12255672 (+) True G35720
TU53776 other downstream 276044 14290420 ~ 14292500 (+) True G36495
XR_006250972.1 other downstream 285667 14300043 ~ 14305304 (+) True LOC122345142
XR_006250973.1 other downstream 285667 14300043 ~ 14305304 (+) False LOC122345142
TU54000 other downstream 633113 14647489 ~ 14651911 (+) False fgf5
TU54012 other downstream 704156 14718532 ~ 14720487 (+) True G36640

Expression Profile