RNA id: TU307390


Basic Information

Item Value
RNA id TU307390
length 585
lncRNA type intronic
GC content 0.47
exon number 3
gene id G270864
representative False

Chromosome Information

Item Value
chromosome id CI01000066
NCBI id null
chromosome length 3719324
location 1354115 ~ 1355390 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAAACTGATCATCAGGTTCAGTGCTAAGCTAGCCTAGTTAACTGTGTTCTGGGCAAGATCTGAGTCAGATCAGCTCTCAACTGATGCGGCAAGACAGATAAAGTGTTCTGCTGAAAGGCACGCGCCTCAAGCGTAAACGGCACAAGTATGAAATCAGATGAGTGTGTCAGCGCCTTGTGGACAATAAGTGTATCTGCATTTCCATATGAAAACAGCAGCAGGACGAAAGAGACTTGAATGAAGCAAGTGGTGCTCAATGCAGAGCCAAAAGACGTCCAGCTCCACCTCTGTGGATCCAGTGGGTGGAGGAATAGAGTAATGGGTAGGGCTAAGGTGTGGTTGGACCTTCTAGCGTCACCCATTACGCCCAAATTACATCTAGAGAGGGATCTGGACTTCACACTCCACCCATGGATCTGCGGTATTCAGCAGAGGGGTGTAATCCTGCTCCGGCTGAGCCACTCTCCGGAGTTTAGCTCCAACCTCATTTAAAACACCTGAAGCAGCTAATCAAGGTCTTTGGGTTTACTAGAAACTTCCAGGCAGGTGTGATTGACTGTGTTATTCAAATACAAACAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307374 lncRNA upstream 30090 1323495 ~ 1324025 (+) True G270855
TU307349 lncRNA upstream 279409 1074219 ~ 1074706 (+) True G270831
TU307345 lncRNA upstream 294381 1059515 ~ 1059734 (+) True G270827
TU307314 lncRNA upstream 295426 1057009 ~ 1058689 (+) True G270801
TU307334 lncRNA upstream 332210 1021693 ~ 1021905 (+) True CI01000066_01021163_01021546
TU307408 lncRNA downstream 44605 1399573 ~ 1399784 (+) True G270877
TU307229 lncRNA downstream 49807 1404775 ~ 1407665 (+) False G270720
TU307230 lncRNA downstream 49807 1404775 ~ 1408011 (+) False G270720
TU307231 lncRNA downstream 49807 1404775 ~ 1407591 (+) False G270720
TU307232 lncRNA downstream 49807 1404775 ~ 1407867 (+) True G270720
CI01000066_01339972_01347463.mRNA mRNA upstream 6652 1339972 ~ 1347463 (+) True CI01000066_01339972_01347463
CI01000066_01334756_01335057.mRNA mRNA upstream 18589 1334756 ~ 1335526 (+) True CI01000066_01334756_01335057
CI01000066_01245954_01257380.mRNA mRNA upstream 96735 1245954 ~ 1257380 (+) True CI01000066_01245954_01257380
CI01000066_01236972_01244870.mRNA mRNA upstream 109003 1236972 ~ 1245112 (+) True CI01000066_01236972_01244870
CI01000066_01187709_01232765.mRNA mRNA upstream 121350 1187296 ~ 1232765 (+) True CI01000066_01187709_01232765
CI01000066_01358866_01360100.mRNA mRNA downstream 3898 1358866 ~ 1360493 (+) True CI01000066_01358866_01360100
CI01000066_01433027_01434982.mRNA mRNA downstream 78059 1433027 ~ 1435523 (+) True CI01000066_01433027_01434982
CI01000066_01435756_01447201.mRNA mRNA downstream 80788 1435756 ~ 1448712 (+) True CI01000066_01435756_01447201
CI01000066_01453501_01454593.mRNA mRNA downstream 98533 1453501 ~ 1454967 (+) True CI01000066_01453501_01454593
CI01000066_01468657_01476221.mRNA mRNA downstream 113689 1468657 ~ 1476254 (+) True CI01000066_01468657_01476221
TU307010 other upstream 1167438 184870 ~ 186677 (+) False G270546
TU307016 other upstream 1168472 184528 ~ 185643 (+) False G270546
TU307009 other upstream 1168472 184870 ~ 185643 (+) False G270546
TU306975 other upstream 1333842 19447 ~ 20273 (+) True CI01000066_00019553_00029834
TU307522 other downstream 489484 1844452 ~ 1847752 (+) True G270973
TU307529 other downstream 604138 1983956 ~ 1985014 (+) True CI01000066_01966833_01995697
TU307673 other downstream 914201 2269169 ~ 2279560 (+) True G271097
TU307667 other downstream 947242 2306852 ~ 2307020 (+) True G271092
TU307682 other downstream 1075742 2430710 ~ 2439169 (+) True G271105

Expression Profile