RNA id: TU474330


Basic Information

Item Value
RNA id TU474330
length 844
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G412957
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 7456193 ~ 7457104 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAATTTTTATTTGAAAGTGGACTAATCCTTTAAATTGCAAAGATCTTCAGTTTTCGTTGAATGTCCGTGGCGGCCTGACAAAGTCTGATGTTTTGCCATGAAACAGGAAGCTGTTGTAAGTCAGACATACAATGTCCAACCTGCCTCAGACTTCACATGTTTGATAAGAGTCATGGCCTGAAGACATCTACATGCAAATAATCAGTTAGTCATCACGCCACCTGTTGGCAACAGGAAATGGCATGCGTTACACTGTAATTCACTCCCTGAAACACATTTAAATATGCCATGAAGTACCAAACATACTAGAAACACGTTAAATCATGCAACACTTGGCTAAGTGCTAATGTATGCGATTAGCGCCACAAAACAGGAAGTTGTTGTAACTCAGGCATACAATGTCCACTCTGCCCCAAACTTCATGCGTTTGAGAGGAGTCCTGCCCTGAACACATCTACATGACAATATTCAGTTATAGTAATAGCACCACCCATTGGCAACAGGAAGTGACATGTTTATCACTGTGATGCACTACTAGCAACATACTAAAATATGCAATTGAATGCTAAACATGCTACAAACATTCTAAAACATGCTAGCAACACTTAGTTGAGTGCTAAAGCATGCTGTTATCATCATGAAATGGACTTGTTGTAACTCAAGCATACAATGTCCAATCTGCCTCAAACTTCACATGTTTGATAAGTGCCCTGGCCTGAAGACATCTACATGCCAAAATTTAGTTATAGTCATATCGCCACCAGCTGGTAGCAGGAAGTGTGGCAAATACAAATGACTGATGTAGTCCTCCTATATTTATACACTTAAATGCATATTGCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474285 lncRNA downstream 58304 7397665 ~ 7397889 (-) True G412913
TU474234 lncRNA downstream 208120 7247838 ~ 7248073 (-) True G412872
TU474199 lncRNA downstream 270962 7183840 ~ 7185231 (-) False G412844
TU474200 lncRNA downstream 270962 7183840 ~ 7185231 (-) True G412844
TU474201 lncRNA downstream 273970 7181864 ~ 7182223 (-) True G412845
TU474336 lncRNA upstream 56852 7513956 ~ 7537605 (-) True G412963
TU474392 lncRNA upstream 123248 7580352 ~ 7580569 (-) True G413019
TU474422 lncRNA upstream 154376 7611480 ~ 7611811 (-) True G413041
TU474454 lncRNA upstream 350513 7807617 ~ 7807833 (-) True G413072
TU474477 lncRNA upstream 424400 7881504 ~ 7883796 (-) True G413093
CI01000300_07441608_07444010.mRNA mRNA downstream 12125 7441061 ~ 7444068 (-) True CI01000300_07441608_07444010
CI01000300_07317708_07388880.mRNA mRNA downstream 67046 7317609 ~ 7389147 (-) True CI01000300_07317708_07388880
CI01000300_07266349_07270919.mRNA mRNA downstream 185274 7266125 ~ 7270919 (-) True CI01000300_07266349_07270919
CI01000300_07252739_07257015.mRNA mRNA downstream 199178 7252739 ~ 7257015 (-) True CI01000300_07252739_07257015
CI01000300_07162898_07167511.mRNA mRNA downstream 288205 7161822 ~ 7167988 (-) True CI01000300_07162898_07167511
CI01000300_07547135_07562235.mRNA mRNA upstream 89944 7547048 ~ 7562235 (-) True CI01000300_07547135_07562235
CI01000300_07619188_07667913.mRNA mRNA upstream 162084 7619188 ~ 7667913 (-) True CI01000300_07619188_07667913
CI01000300_07689056_07718164.mRNA mRNA upstream 231776 7688880 ~ 7718437 (-) True CI01000300_07689056_07718164
CI01000300_07721516_07724293.mRNA mRNA upstream 263791 7720895 ~ 7725536 (-) True CI01000300_07721516_07724293
CI01000300_07731299_07746699.mRNA mRNA upstream 272510 7729614 ~ 7746699 (-) True CI01000300_07731299_07746699
TU474008 other downstream 765860 6652998 ~ 6690333 (-) True G412681
TU473866 other downstream 1240614 6214920 ~ 6215579 (-) True G412555
TU473685 other downstream 1695004 5711685 ~ 5761189 (-) True G412378
TU472166 other downstream 3061072 4390320 ~ 4395121 (-) True G411012
TU471627 other downstream 3375654 4076764 ~ 4080539 (-) True CI01000300_04075307_04079312
TU474529 other upstream 689428 8146532 ~ 8146889 (-) True G413140
TU475129 other upstream 1512344 8969448 ~ 8976000 (-) True G413664
TU476061 other upstream 2200945 9658049 ~ 9660805 (-) False G414498
TU476052 other upstream 2201883 9658987 ~ 9660805 (-) False G414498
TU476415 other upstream 3238907 10696011 ~ 10700634 (-) True CI01000300_10698449_10700497

Expression Profile