RNA id: TCONS_00020868


Basic Information

Item Value
RNA id TCONS_00020868
length 1183
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_010659
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22236961 ~ 22251457 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGATAGAGAGTACAATGAAAAATTCCACAACTGCATCATGACCTCAAAGTACAACATTATTACCTTCTTACCAGTCAACCTGTTTGAGCAGTTCCAAGAAGTTGCCAATACCTACTTCCTGTTTCTCCTCATACTGCAGTTGATTCCACAGATTTCCTCATTGTCCTGGTTCACCACCATTGTGCCTTTAGTGCTGGTGCTGAGCATCACTGCAGTTAAAGATGCCACCGATGACTATTTTCGTCACAAGAGTGACAACCAGGTGAATAACCGTCAATCTCAGGTCCTCATCGGTGGCATTCTTCAGAAGGAGAAATGGATGAATGTCAGAGTGGGTGACATCATCAAACTGGAGAACAATCAGTTTGTTGCAgcTGACCTGCTCCTGTTGTCCAGCAGTGAACCTCATGGCCTCTGTTACATTGAAACTGCAGAGCTGGATGGAGAGACGAACATGAAGGTGCGTCAGTCTCTGTCTGTTACCTCAGAGCTGGGAGATCCCAATAATCTGGCCCAGTTTGATGGAGAAGTGGTGTGTGAGCCTCCCAACAACAAGCTGGACCGTTTCTGCGGGACGCTGTACTGGAGAGAGTGTAAATACCCGCTCAGTAACCAGAACATGCTGCTCCGTGGCTGTGTGCTGCGCAACACTGAGAGCTGCTACGGCCTTGTCATATTCGCTGGTCCTGACACCAAACTAATGCAAAACAGCGGACGGACAAAGTTCAAGCGAACAAGTATAGACAGACTGATGAATACACTGGTGTTGTGGATTTTTGGGTTCCTGGTTTGTATGGGAGTGATCTTGGCCATAGGAAATGCAGTTTGGGAGAAGGAAGTTGGTGCTTTGTTCCAAAGTTTTTTACCCTGGGATCCTCCAGTGGACAACTTCCTGTTCTCCGCATTCCTGTCTTTCTGGTCCTACGTCATCATCCTCAACACAGTGGTGCCAATTTCGCTCTATGTCAGTGTGGAGGTGATTCGTCTGGGTCACAGTTACTTCATTAATTGGGACCGGCGGATGTTCTGCAGTCGCAGTAACACGGCAGCAGAGGCCCGGACCACCACACTGAATGAAGAGCTGGGACAGGTGGAGTACATCTTCAGTGACAAGACAGGAACACTCACCCAAAACATCATGACCTTCAACAAGTGCTCCATCAACGGCCACGCATACGGTAA

Function

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2474 Predicted to enable ATP binding activity; ATPase-coupled intramembrane lipid transporter activity; and magnesium ion binding activity. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP8B2 (ATPase phospholipid transporting 8B2).

Ensembl:

ensembl_id ENSDART00000158500

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020863 lncRNA downstream 172581 22060569 ~ 22064456 (-) True XLOC_010656
TCONS_00020861 lncRNA downstream 224717 22009140 ~ 22012320 (-) True XLOC_010654
TCONS_00021803 lncRNA downstream 224737 22009119 ~ 22012300 (-) False XLOC_010654
TCONS_00022155 lncRNA downstream 230585 21999848 ~ 22006452 (-) True XLOC_010652
TCONS_00021802 lncRNA downstream 246699 21960125 ~ 21990338 (-) True XLOC_010653
TCONS_00022156 lncRNA upstream 82878 22334292 ~ 22335517 (-) True XLOC_010662
TCONS_00022157 lncRNA upstream 111058 22362472 ~ 22368440 (-) True XLOC_010663
TCONS_00021804 lncRNA upstream 260568 22511982 ~ 22514463 (-) False XLOC_010666
TCONS_00021805 lncRNA upstream 260568 22511982 ~ 22515521 (-) True XLOC_010666
TCONS_00020894 lncRNA upstream 541661 22793075 ~ 22863320 (-) True XLOC_010674
TCONS_00020866 mRNA downstream 11742 22199510 ~ 22225295 (-) True XLOC_010658
TCONS_00020864 mRNA downstream 42637 22177254 ~ 22194400 (-) False XLOC_010657
TCONS_00020865 mRNA downstream 45031 22178115 ~ 22192006 (-) True XLOC_010657
TCONS_00020862 mRNA downstream 214581 22015648 ~ 22022456 (-) True XLOC_010655
TCONS_00020858 mRNA downstream 232635 21947219 ~ 22004402 (-) False XLOC_010652
TCONS_00020869 mRNA upstream 37363 22288777 ~ 22294265 (-) True XLOC_010660
TCONS_00020870 mRNA upstream 44248 22295662 ~ 22303130 (-) True XLOC_010661
TCONS_00020871 mRNA upstream 112286 22363700 ~ 22385705 (-) True XLOC_010664
TCONS_00020872 mRNA upstream 226747 22478161 ~ 22483013 (-) True XLOC_010665
TCONS_00020874 mRNA upstream 269298 22520712 ~ 22585309 (-) False XLOC_010667
TCONS_00020856 other downstream 319712 21912915 ~ 21917325 (-) False XLOC_010651
TCONS_00020846 other downstream 413788 21822734 ~ 21823249 (-) True XLOC_010645
TCONS_00020844 other downstream 428682 21807422 ~ 21808355 (-) True XLOC_010642
TCONS_00020829 other downstream 773319 21455954 ~ 21463718 (-) False XLOC_010634
TCONS_00020827 other downstream 785753 21451155 ~ 21451284 (-) True XLOC_010635
TCONS_00020893 other upstream 541661 22793075 ~ 22863315 (-) False XLOC_010674
TCONS_00020898 other upstream 1084114 23335528 ~ 23336562 (-) False XLOC_010677
TCONS_00020899 other upstream 1084128 23335542 ~ 23337575 (-) False XLOC_010677
TCONS_00020902 other upstream 1087976 23339390 ~ 23346051 (-) True XLOC_010678
TCONS_00020906 other upstream 1271847 23523261 ~ 23523375 (-) True XLOC_010681

Expression Profile

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