RNA id: TU144658


Basic Information

Item Value
RNA id TU144658
length 231
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G125220
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 24622403 ~ 24622633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attcattatatgttgtattcattatatttctatgcatttaatcaTATCCGATAGGCGATATCTGGATAGATAACTTCTGAAAAACTGGGCCCTAATGATCACTACAAGGACACAGAAATACAGCTACAGATGACAGACTTACACATTCCAACACAACAGAATGACACTAAACTGAAGAACCTCACAAAGTAGAGCCATGAGACATGCACCTTATAGGGTGAGGGAGTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144630 lncRNA downstream 51713 24569913 ~ 24570690 (-) True G125192
TU144552 lncRNA downstream 150048 24472013 ~ 24472355 (-) True G125126
TU144549 lncRNA downstream 152419 24469753 ~ 24469984 (-) True G125123
TU144498 lncRNA downstream 201499 24406087 ~ 24420904 (-) True G125083
TU144497 lncRNA downstream 209319 24394855 ~ 24413084 (-) False G125083
TU144670 lncRNA upstream 11133 24633766 ~ 24685283 (-) True G125230
TU144684 lncRNA upstream 25930 24648563 ~ 24650144 (-) True G125244
TU144714 lncRNA upstream 84841 24707474 ~ 24707709 (-) True G125273
TU144772 lncRNA upstream 191011 24813644 ~ 24834540 (-) True G125325
TU144794 lncRNA upstream 233009 24855642 ~ 24856067 (-) True G125347
XM_036943349.1 mRNA downstream 21018 24584393 ~ 24601385 (-) True LOC110538978
XM_036943353.1 mRNA downstream 27018 24584393 ~ 24595385 (-) False LOC110538978
XM_021625867.2 mRNA downstream 81505 24531424 ~ 24540898 (-) False LOC110538887
XR_005035978.1 mRNA downstream 81505 24531424 ~ 24540898 (-) False LOC110538887
NM_001160485.1 mRNA downstream 117810 24503806 ~ 24504593 (-) True LOC100301652
XM_036943381.1 mRNA upstream 240273 24862906 ~ 25110554 (-) False LOC110538828
XM_036943390.1 mRNA upstream 249098 24871731 ~ 25110583 (-) True LOC110538828
LOC110533704 mRNA upstream 794807 25417440 ~ 25427699 (-) False LOC110533704
XM_036943476.1 mRNA upstream 806350 25428983 ~ 25441162 (-) False LOC110539072
XR_005035994.1 mRNA upstream 806350 25428983 ~ 25441162 (-) False LOC110539072
TU144590 other downstream 87874 24531662 ~ 24534529 (-) True LOC110538887
TU144456 other downstream 297567 24324580 ~ 24324836 (-) True G125043
TU144410 other downstream 352267 24269226 ~ 24270136 (-) True G125003
TU144265 other downstream 460960 24159167 ~ 24161443 (-) True LOC110538705
TU144219 other downstream 717726 23903839 ~ 23904677 (-) True G124840
TU144748 other upstream 152587 24775220 ~ 24776627 (-) True G125305
TU146650 other upstream 1938981 26561614 ~ 26562127 (-) True G127083
TU146643 other upstream 2028743 26651376 ~ 26663014 (-) True LOC110539285
TU147564 other upstream 2648627 27271260 ~ 27278124 (-) True LOC110485245
TU149009 other upstream 3143524 27766157 ~ 27766532 (-) True G129250

Expression Profile