RNA id: XM_036976845.1


Basic Information

Item Value
RNA id XM_036976845.1
length 5422
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110523253
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 14148432 ~ 14231585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAACggagtttttaaaatgtttagatCATTCCATTGGTCCTTAAGTTAAATCGCCACTAACCCCGGGAaccgggccatgcaaaacgaGCTGTCCCATTCTTTCCAAGCCAACCTCTGTCCCCGCTTCCCGGAGCAGAGCAGACATaaaaacaacaaacacagagagcaGTCAGTAGTAGCCTACATACTCCTCCTGGGTGTTCAGTTTGTCAAGGGCTTTTGTGAGAGAAAAAACAGGACGCCGTTTTACCCGCAAGACATGGGGGAAGACTACCACGGTGTAGGCTTCATATGACATTGTTGCTGTTGTAGTGATACCGACGGACGACACCAATGGTTTATCTAACGGGAGCTCAGTGCGAGGGACGCAGTATCAAGCTGAGTTCCCCTGATGTGATGTTCGATGCCAGCACCTGGAGGATACGCAACATCTGGGACGGGGTGAAACTAGAGGTCGCCGGGGATGCGAGCCCTGTTGTCTTGCATAGCTTCACCCAACTGGACCCTGACCTTCCGCAGTTGGAGAATACGACCCAGGAGAtcggtgaggaggtggaggacgGGGCGGTGTACACCATCACCCTGCGGAAGGTTCAGatgctccaccaccaccaccatcctgGCCATCACAGTGGCGGCAGCGGGGCTAGTAAGGGCCAGCGCTGGCTGGGTGTAGAGACGGATGCGGCCCTCAGCCTGTACGAGACGTGCAAGGTGCGCACCATCAAGGCAGGCACGCTGGAGAAGCTGGTGGAGTACATGGTCCGGGGCAACGATTCCACCTACGTCACCATCTTCCTCTGCACCTACCGCTCCTTCACCTCCACCAAGCAGGTCCTGGACCTACTGCTCAACAGGTATGCCAAACTCCAGCTTGGATCAGAGGGCCACAGACTGACTCACGACGATCGTACAGAACTGAGGAAcaCAATATCCTCCATCTTGGGGGCGTGGCTGGACCAGTATTCTGAGGACTTCTGGAAGCCTCCGGAGTACAGCTGTCTGCGACGACTAATCTCCTACCTGCACCTCAACTTCCCAGGATCGGACCTGGAACGCCGCGCCTGCAACCTCCTGACACACTTCCACCGCCGACAGCTCCAGGAGCCCGAGCACGAGTTGCTGGACCATGGTGGCTATTCGTTCACCCTACTGGAAGAGAATGGCTACGAGGATGAGCAGCTGGACTTCTTGAACTTTGACCCGGCGGTGGTGGCCGAGCAGTTCACCCTCATGGACGCGGAGCTCTTTAAGAAAGTGGTTCCCTACCACTGTCTGGGGAGTATTTGGTCGCAGCGGGACAAGAAGGGCAAGGAACACCTGGCCCCCACCATCCGTGCCACCGTCACCCAGTTCAACTGCGTCACCAACTGTGTCATCGCCACATGTCTGAGCGAGCGCTCGCTCAAACCCACGCAGCGCGCCAAGCTGGTGGAGCGCTGGATCGAAGTGGCTAGGGAGTGTCGAATCCTGAAGAACTTTTCTTCACTGCGGGCTATCCTCTCTGCTCTGCAGTGCAACCCGGTCCACCGGCTGAAGAGGACATGGGACGAGGTGTCCAGGGAGAACTTCCGCATCTTCCATGAGTTGTCAGAAATCTTCTCTGACGAGAATAATCATTCGCTCAGCAGAGAGCTGCTCATTAAGGAAGGCACGTCCAAATTCGCCACCCTGGAAATAAACCCCAAACGAGCCCAGAAGAGACAGCAGCAACCCCGAGACCTGAGTGTGATGCAGGGGACCATTCCCTACCTGGGCACTTTCCTTACAGACCTAGTCATGATGGACACAGCCATGAAGGACTACCTGGACGGAGGGCTGATCAATTTTgagaagaggaggaagGAGTTTGAGGTGATTGCCCAGATCAAGCTTCTGCAGCTGGCCTGCAACAACTATAACTTCACCCTAAACAAGCGTTTCCGAGAGTGGTTCTCCGGTGTGGACAAACTCACAGAGGctgagagCTACAGCCAGTCATGTGAGATCGAGCCATTGTCAGAGTCAGCCTCCAACACTCTCAAGAAGAAGAACACAGGAATCATCAAACGCTGGAGCGAtcGCCAGCCTGCCAGCTCGGAGCCAGGCTGCAGCAGTGCGGGCAGCTCCCACTCCAAGTCCTTTGACCAGCTGCGTTACGCCCCCTGCCTGGGGGGCtcgggtggaggtggagggggtgaTGGAGCGGACTCCCTGAGCGTCACCTCCGCTGGCTCCAGCAGCTCCGATGTGGAGGAGATCAATATCAGCTTCATCTCCGACTCACCCGATGTCCACGAGCgaaagACCTCCACGCCTTCCGTAAAACATTCCAATTCCACGTTAGGGAAGTGCGGCCCCTTGCCTGACCTGGCACCCACGttctgggagtctacctctctgtcctccttggATGCCTCTGGTCTGGGCTCTGGCTCGGGCTCCAGTagcgcctcctcctcctccatgtcctCCACGCCTGTGGCGGGTGCGGGCTCCCGCTCACACAAGCGCTCCGTGTCGGGCGTGTCCAGCTACTCGTCGCTGTCACTGCCCCTCTACAACCAGCAGGTGGATGACTGCTGCATCATCCGGGTCAGCCTGGACGTAGACAACGGCAACATGTACAAGAGCATCCTGGTGACCAGTCAGGACAAGACGCCGGCGGTGGTCAGGAAGGCCATGGTGAAACACAACCTGGACCGGGAGAGAGCGGAGGATTACGAACTGCTGCAGAAGATCTCTGAGGAGAAAGagCTGAAGATTCCAGACAATGCCAACGTTTTCTATGCCATGAACTCTTCGGCCAACTACGACTTTGTCCTGAAGAAACGCGGCTTCCCCAAGGTGGGCCGGACCAAGCACGTGGCCAGCTCCACCCTGCCGCGAATGAAGCAGAAAGGCCTGAAAATCGCAAAGGGCATCTTCTGAGGGGTAATGCCATGTCACCAGAAACCCTCACCCACCTCCCTGCTTCCTGCTGGGCTTTCTGGGTGCCATCTTTGAGTGCCACCCCTGCTGTGCCATGGTAGAGGGACCTGTTGCCAGCTAGGCTGTGTTCAGCATCTGAGCGTGAAAGCCTCAGAGGACTAATAAAGCTGAATGGAATGGAAATCCCTATTGGCCAATGAACTTGCACTCAACTCCATTTTGCGAGGCAGGTGACTGTCCTTGTGGAAGTAGTGACTCTGTGTGGATGCTGTGTATGCTTACCCACATCTGACCCCTCTCCCAGGTGTTTCCTAACCAGGCTACAACCCATGTTCAGGTCACTTCCTGTGAGTCCACATCACTTCCTGTTAGCTTCACAGCTCTCTGTGGATGCCCTAATCGAGAGGGGAAAACCCAAGTAAAAATATAACTATGTCATCTAGGTGCGTAGGAAAATGAATTCCTCCCCTCTAAAGGAGTTACACTCCCTCTAGTTTCTACAGACCTCTCCCTCAGCAAAGGTTCAGGTACTATTTTTTTACACTCCTTTCTAGACTACCATCAACTGCGTCTGTTTCTTCGATGTTCCGCGACACGCGGactgagacagatggacagatgctCAGTACTGCCAGCTAGCGGAGGGAAACGCGTTCCAACGAACCACTAAAAGGATTTTGGGAGAGAAAGGCCCCTACTGGATAGATACATTGGGTTGTTAACCAATCATCAGAAACTTTACTCCTTTTAACTCCTCACTGCTAATGGGAACATGTCCAGTTTGTTAAACTAACACTATTCACACAAATAGGGCATTATTATTACTACAAACATTCAATAATAGCTCATTTTGTCACTGCTTTGATGCGGCGGCACTCTGCATTTGTGCATTGCGTCTTATTTCTCCAAGTGGTGCTAACAGACAATGAAATGCTACAGCCAgcccgctccctccctccctccccttttaTTTCATGCCTGATGTCGTTCAGTTTCACACTAGAGTTTGAGAGAGAGGCTCTCTCCTGACATGAAGGAGTAGGCAGCCATGAGGGCTCAATGATGATGGTTCATGGAAATAGTGCAACTGAGGCATCCAGCATCCATTTTGGTTCAGTATTTGTTTTAATGGGTGCATTTCTGGGAAGCCAAAAAAAGCGATGTGGCCAGTTAGAGTACATTATGGTGACCTGAAATGCACAATGTCAGGCGGCCATTGCGGCTCAAACACGATGGCACTAAATGGCTTCTCCTCGATTGGCAATGCCTTAGAGAGTAGAACTGCCTACATGTGAGCCGAATGGCACAAAATGGCTGTTGTTGGCATGGTGACCACTCCCTCAGATCATCAAGAAAGTTAGCTTTGAGCCATTTGATGGACCCCAATGTGTGTTAGACCCTCTTGTCAATGACTTGCAGGAGGAGAGAAATGTATGTAAAAGGACACTGTGCTCCCTTTTAACTAGAAGTGCGTGTGTGGAAAGTACTATAGCACtcggagagagagatgtatgttGTATTGTGAAACGAAGCGTGGTTTTTAAATGTCCAGTCTTTTTGTTCCCTATAGTGTAAAGAAGAAGAAACGAGAATGAAAGGACTGTCCCTTTTGTTTGCTCCCTTCCTTTCATCACAAGGCCTTTCATCCTTGTGTACCAGGGTTGGATGTCAACTTCAGTTCAATTCAGTTAATTCAGCAGATAAAtgaaaaagaggaagagaaagtacAACTCAACTAAAACATTGTCAACTCCACGTGTGCCAAAGACCGGTGGACTATGATGAAGTATGAGGTGGTTTCGGGAGCATTGAGATTTGAAGTGGAGGGAGTGAGTTTGCCTGCTGTTGAGAGGTTCAGAAGTTGTGATTCTTTCTGTATGAGATGAGTCCTTGGTTTGTAGTACCCCATGTCTATCCATTTCCTACAGTATTGCAGCACTTTGGATCAAACCTAATATCCCTATTTAACAGCAGCCATGACAGTAGTGTTGTGGATTACAGTGTTAAAACTCAAGCCTTTGCTCAAAGAGTTTTCTGCAACTAGTGACTTTTTGACTGTGACCGTGTCACACTGAgtacggttacatgcacacaataatacaaTTATAGTCaaattaatataatagtttgattaaaacgtttacatgctttgcgAGAATAAATGATTTCCCTCATAATTGTGTTTACATGGAGCCATCTGAAATCAGACAACCTGGTGGGACTTTGATGAATGCAGAATATCggcaatcaaaataaacgttctaccacagcGACCATGCTATTTGAGAAGCATAGttgattctgagttcggacatACAACGTTTATGTGAAAACGACTTCTAAGATGTGTACTTTAAGTTTTTCCTAACTCACTTCACTCGTGTAAAAGAAGGAAGCTCGCCCTGCTtgcgctaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaacaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU420501 lncRNA upstream 27561 14145981 ~ 14147544 (+) False G369974
TU420502 lncRNA upstream 27561 14146792 ~ 14147544 (+) True G369974
TU420495 lncRNA upstream 30001 14143417 ~ 14145104 (+) True G369972
TU420504 lncRNA upstream 36478 14137903 ~ 14138627 (+) True G369976
TU420444 lncRNA upstream 85134 14074753 ~ 14089971 (+) True G369922
TU420551 lncRNA downstream 14951 14244259 ~ 14251198 (+) True G370022
TU421013 lncRNA downstream 80714 14310022 ~ 14310505 (+) True G370442
TU421014 lncRNA downstream 82241 14311549 ~ 14311842 (+) True G370443
TU421015 lncRNA downstream 82861 14312169 ~ 14312573 (+) True G370444
TU421023 lncRNA downstream 110041 14339349 ~ 14339582 (+) True G370452
XM_036976843.1 mRNA upstream 32639 14128559 ~ 14142466 (+) False LOC110523252
XM_036976841.1 mRNA upstream 32639 14128792 ~ 14142466 (+) False LOC110523252
XM_036976844.1 mRNA upstream 32639 14128812 ~ 14142466 (+) True LOC110523252
NM_001165172.1 mRNA upstream 184878 13986695 ~ 13990227 (+) True arpc5l
XM_036976835.1 mRNA upstream 292964 13860463 ~ 13882141 (+) True ncs1a
XM_021601785.2 mRNA downstream 42997 14272305 ~ 14308719 (+) True mmp11b
XM_021601787.2 mRNA downstream 116325 14345633 ~ 14347412 (+) True LOC110523258
XM_021601789.2 mRNA downstream 122145 14351453 ~ 14367540 (+) False LOC110523259
XM_021601790.2 mRNA downstream 122145 14351453 ~ 14367540 (+) True LOC110523259
XM_021601793.2 mRNA downstream 147651 14376959 ~ 14429468 (+) False LOC110523261
TU420256 other upstream 405809 13765247 ~ 13769296 (+) True G369763
TU418769 other upstream 1065971 13108696 ~ 13109134 (+) True G368440
TU417909 other upstream 2295070 11878329 ~ 11880035 (+) True G367684
TU417154 other upstream 2746395 11425642 ~ 11428710 (+) True G366973
TU416883 other upstream 3197953 10976682 ~ 10977152 (+) True G366748
TU420927 other downstream 26495 14255803 ~ 14259133 (+) True G370360
TU420951 other downstream 91796 14321104 ~ 14325895 (+) True G370382
TU420985 other downstream 138364 14367672 ~ 14368161 (+) True G370414
TU421530 other downstream 575353 14804661 ~ 14805471 (+) True LOC118964542
TU421788 other downstream 818870 15048178 ~ 15053556 (+) True LOC110519479

Expression Profile