Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU502850 |
| length | 1247 |
| lncRNA type | sense_over |
| GC content | 0.40 |
| exon number | 1 |
| gene id | cdh2 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 79385540 ~ 79459507 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005509 | calcium ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU502856 | lncRNA | downstream | 4085 | 79381242 ~ 79381457 (-) | True | G444318 |
| TU502770 | lncRNA | downstream | 31139 | 79354168 ~ 79354403 (-) | True | G444238 |
| TU502767 | lncRNA | downstream | 32477 | 79352850 ~ 79353065 (-) | True | G444235 |
| TU502698 | lncRNA | downstream | 125312 | 79259305 ~ 79260230 (-) | True | G444170 |
| TU502695 | lncRNA | downstream | 131929 | 79253157 ~ 79253613 (-) | True | G444167 |
| TU502988 | lncRNA | upstream | 137749 | 79524537 ~ 79525518 (-) | True | G444443 |
| TU502995 | lncRNA | upstream | 145718 | 79532506 ~ 79532738 (-) | True | G444449 |
| TU503119 | lncRNA | upstream | 241646 | 79628434 ~ 79628680 (-) | True | G444572 |
| TU503120 | lncRNA | upstream | 243122 | 79629910 ~ 79630114 (-) | True | G444573 |
| TU503124 | lncRNA | upstream | 245650 | 79632438 ~ 79632646 (-) | True | G444577 |
| XR_005051973.1 | mRNA | downstream | 91157 | 79294259 ~ 79294385 (-) | True | LOC118964780 |
| LOC118964722 | mRNA | downstream | 102951 | 79243247 ~ 79282591 (-) | True | LOC118964722 |
| XM_021604478.2 | mRNA | downstream | 158903 | 79219153 ~ 79226639 (-) | False | LOC110524635 |
| XM_021604464.2 | mRNA | downstream | 998475 | 78383005 ~ 78387067 (-) | True | hyi |
| XM_021604453.2 | mRNA | downstream | 1139712 | 78239768 ~ 78245830 (-) | True | LOC110524621 |
| XM_036978489.1 | mRNA | upstream | 101 | 79386889 ~ 79450198 (-) | False | cdh2 |
| XR_005051592.1 | mRNA | upstream | 149796 | 79536584 ~ 79606825 (-) | True | LOC118964535 |
| XM_021604482.2 | mRNA | upstream | 478389 | 79865177 ~ 79896739 (-) | False | LOC110524638 |
| XM_036978490.1 | mRNA | upstream | 478389 | 79865177 ~ 79896739 (-) | True | LOC110524638 |
| XM_036978494.1 | mRNA | upstream | 601338 | 79988126 ~ 80015753 (-) | False | b4galt6 |
| TU502678 | other | downstream | 148081 | 79223140 ~ 79237461 (-) | False | LOC110524635 |
| TU502679 | other | downstream | 159674 | 79224003 ~ 79225868 (-) | True | LOC110524635 |
| TU502514 | other | downstream | 419513 | 78964631 ~ 78966029 (-) | True | G444001 |
| TU501172 | other | downstream | 1303532 | 78081745 ~ 78082010 (-) | True | G442807 |
| TU500657 | other | downstream | 1758328 | 77623299 ~ 77627214 (-) | False | G442381 |
| TU503246 | other | upstream | 344199 | 79730987 ~ 79731536 (-) | True | G444691 |
| TU503706 | other | upstream | 595673 | 79982461 ~ 79987704 (-) | False | G445115 |
| TU503794 | other | upstream | 789974 | 80176762 ~ 80177080 (-) | True | G445197 |
| TU503806 | other | upstream | 838687 | 80225475 ~ 80226201 (-) | True | LOC118964653 |
| TU503818 | other | upstream | 859155 | 80245943 ~ 80261505 (-) | True | G445220 |
