RNA id: XM_021606588.2


Basic Information

Item Value
RNA id XM_021606588.2
length 3466
RNA type mRNA
GC content 0.50
exon number 11
gene id fbxw8
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 44309894 ~ 44345449 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTGTAACTATGTTAGAAAAACATGGCAGAAGACGAGCTTCTGGCGTTCAGAGAGCATTGGAAGCAAGAACTGACGATTAAAAACGAGGCGCATTCGAACCGTAACGTTACTCTTCAACCAAGTCGGGAAGACTCTAAATTAAAACGGTATTTTGAAGATTTCGGTCAGAACAGAAGTGAACCAGAAAAAAGACAGGATTCGACATCACAGGGGAGCAGTAAGGGAGGACAGGATGCATTTTTGTCTGCAGCAAAAATTCAAAATGAGGACCAACCCGAATATGTGTCGATAGCCGAGGGCTTGCTAGATGGAAGGACCAGTCCCTTGTTGGAGAGGATCCAGGAGGAGAGGACTCGAAGGAAGAGACAATACCACAGTCTGACAAGCGCCTGTAACACCTCCCAAAAACAACCCCAGAGGAAAATTAACAAGGGTGACAAATTAGTGGATCAATTCATTCAAGACCTGAATGAGACAAATGACATTCCCTTCTTTGACATTGAGTTGCCCTACGAGTTAGCTCTGAAGATCTTCCAGTACCTCAGTCGGACAGAGCTGGGGCGATGTGCTCAGGTGAGCAAGGCGTGGGGGGTCCTGGCAGAGGATGAGGTGCTGTGGTTTAGGATGTGTCAGACAGAGGGTTATCAGCACGGGGCCTCTGTCTCTGACTCCCCCTGCTGGAAGAGCATGTTACGAGACTGCAGGAACTCTGAAAACACTGTGCGCTCCAACTGGAAGAATCGTGTTGGATCAATCAGCCAACTGCAGTACGAGCTGGGGAAAGTGTTGTGTGATGTCAGTTCCTGTGACAGCTATGTTGTTGCTGGGTACACGTCAGGGGACGTGAGACTGTGGGACACTCTCCACTGGGACTCTGCAGCCTCCTTCCTGAAGCCAAGCCCCCTGACGGCAGACGTCACCCCCAGACCTCACGTCAGTCACATCCGGGTCAACAACACTGTGGCTGTGGCTGCCTATGACGATGgatgtgtggatgtgtggagcACAGAGACGGGACAGGAGCCCGTCCACCACTTCCAGATCCCTGGGAGGGTCCACGCCCTGGCTCTGAGCCTGGAGAGCCCCACCTTGGCTACTGCTGCTGGGCTAGACGTCCGGCTGGACCAGCCTGATGAGAGGGGCTACTGGAGAACCCTCTGCCAGGCCACGCTACCCAAACCTGTGGAGTCTATGGTTGTGGTGCCATGGGCCGGGGGGCGAGGAGGGGACAGTGTCcccctggtggccctgtctgctGGGGAGACGGTGTTCCTGCTGGCCCCTGAGGACTTGGAACCCCGGGTGCTCCACACCGTCTACGGCCACCCCATCACCTGTCTGGATGCCTCGGCCTCTCACGCTGCCCTGGGGGTCAAGAGCTGTGGCTGGGCCATGAACGATGGAGGCAACAAGatccATGTGTACAGCCTAGAGACGGGCCAGTCGGAGATATCTGTGGGGAACTCAGCGGGAGACTTCTCCTGTGTCAACCTGAGAGACAGCCCTCCTCACATGCTCATCTGTGGAAACAAAGATAGGAGGGTGAGGGTGTTTGACCTGCGCACCGGCTCCTCTGTCACATCGCTGTATGCCCACCACATGGGCGTGACCTCCGTGCAGGCAGACGATTGGAAGATTGTGAGTGGCGGAGGTGAGGGATTGGTCTGCGTCTGGGAGATGAGGATGGGAGCTAAACTTTGGGAGATGCACAACAGGCACCCAGTCAGACACTTGAGATTCAACACCAGCACTCTGGTGACAGCCAACATCCCAGACGAGAAGTCTCCACGAGGGGCCTGCATCACAGATGATGACCTCACAGCCCACCGCAGACATAGGGGAGTGATTTGCCACTATGACTTCTCAGAGGACTCCACCTCCCAggaccatgttctgcccatctgCAGGTCCAACTATGTGGAGTCATCTGGCTACAACTACAACATTGGCCTGGCCGTGCCCTATGACATCCTGTCTGGCTCTCACCCCTCCCACTGACCCCTACCACCAGCCCTTCAGACCCCTACTATTAGTACCATCAGCCCTGCAGACCCCTTCCACCAGCCCATGTTCTGCCCATCTGCAGGTCCAACAATGTGGAGTTACCTGGCTACAACTACAACATTGGCCTGGCCGTGCCCTATGACATCCTGTCTGGCTCTCACCCCTCCCACTGACCCCTACCACCAGCCCTTCAGACCCCTACTATTAGTACCACCAGCCATTCAGACTCCTTCCACCAGCCCTTCAGACTCCTTCCACCAGCCCTTCAGACCCTTACCACCAGCCCTTCAGACCCCTTCCACCAGCCCTTCAGACCCCTTCCACCAGCCCTTCAGACTCCTTCCACCAGCCCTTCAGACTCCTTCCACCAGCCCTTCAGACTCCTTCCACCAGCCCTTCAGACTCCTTCCACCAGCCCTTCAGACTCCTTCCACCAGCCCTTCAGACCCCTACCACCAGCCCTTCTGACCCTTACCACCGACCCTTCAGACCCTTACCATCAGCCCTGCATACCCCTACCACCACCAGCTCTGCAGACCCCTACCACCACCAGCTCTGCAGACCCCTACCACCAGCCCTGTAGACAGTATGTACAAAGCAAATCAGCTTTTATATATCCTTTTGATTTTTCAAACTGAATCAGATTTTTAATTAGTAGCTGCCCTTATTTTTAAAAGAAGTTCATGTTTCCTTGGACTGTTAAGGAGTTTGATTTAATCTTGCAATTTTTTCCTAGAGCAATGGATTCTGAATGGATTTCATCTTATGATGGGATCATGTTTTGTTAAAGATCCAGTGCAGTCAAACACgtgatttttctgtgttttatatatatttccacattgAGGTTGTGAAATTTGAGCATGATGATATTGCTCTTTTAGTGTTTGGTTAGCCTGTTTTGGTGGCATAGATGTTTGGCCTTCCATAGTGAAATCACCATgctgtaaattagttaatagagcAATAAGAAAGATGGTTTCAAACCCCTGCCAATAATAGCTCTTTTTCAGTTTTCTCCTTACCACTCCCAGAtattcctagcaaaattcttgcttgagaaatttctctttgctaagaagctactTCTGTTAATCTTTTACCATTTTACCGTGAAACAATCACAGTACGGTACTTAAtttttacccagaaatgatttgatattgagatagaaactgctgcattggacctttaactagACATTGAAGTTGGTACTGACATCCTCCATAAATTGATGGGCAACAACGGTCACATGGTCTTTTCACTTAATTTACTTCAGTGGAATTGCAAATGGCAGTCTTATCTATCTTCACAAGAAGATGGAAGCAAAACACAAGTAACTCCCAACAATTTTTCATCTCatcatttctttatttttaattaatGACTAAAATATGTGTATACATTATTGCAAAGGCTATTACAGGTTCTTTGGATATAAAGAACAATATTAATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU580230 lncRNA downstream 25314 44284274 ~ 44284580 (-) True G511345
TU580227 lncRNA downstream 27700 44281975 ~ 44282194 (-) True G511342
TU580045 lncRNA downstream 106499 44203136 ~ 44203395 (-) True G511189
TU580036 lncRNA downstream 128205 44181258 ~ 44181689 (-) True G511181
TU579802 lncRNA downstream 307700 44001893 ~ 44002194 (-) True G510951
TU580186 lncRNA upstream 2094 44339033 ~ 44341655 (-) False fbxw8
TU580185 lncRNA upstream 2396 44339335 ~ 44342361 (-) False fbxw8
TU580187 lncRNA upstream 5142 44342081 ~ 44342902 (-) True fbxw8
TU580262 lncRNA upstream 12718 44349657 ~ 44350163 (-) True G511375
TU580263 lncRNA upstream 13488 44350427 ~ 44351990 (-) True G511376
XM_036980165.1 mRNA downstream 37508 44228585 ~ 44272386 (-) False nf2a
XM_021606583.2 mRNA downstream 37509 44210850 ~ 44272385 (-) False nf2a
XM_021606584.2 mRNA downstream 38197 44210850 ~ 44271697 (-) False nf2a
XM_036980163.1 mRNA downstream 210763 44045046 ~ 44099131 (-) True LOC110526006
XM_036980157.1 mRNA downstream 354637 43940790 ~ 43955257 (-) False prodhb
XM_021606592.2 mRNA upstream 28917 44365856 ~ 44394019 (-) True LOC110526015
LOC110526901 mRNA upstream 65872 44402811 ~ 44409947 (-) True LOC110526901
XM_021606593.2 mRNA upstream 74757 44411696 ~ 44435774 (-) False lrrc74b
XM_036980172.1 mRNA upstream 99353 44436292 ~ 44501179 (-) False nos1
XM_036980173.1 mRNA upstream 99353 44436292 ~ 44501179 (-) False nos1
TU580171 other downstream 98071 44209465 ~ 44211823 (-) False nf2a
TU580173 other downstream 99229 44209338 ~ 44210665 (-) False nf2a
TU580172 other downstream 99229 44209465 ~ 44210665 (-) True nf2a
TU579749 other downstream 361505 43946338 ~ 43948389 (-) True prodhb
TU579133 other downstream 785786 43523714 ~ 43524108 (-) True G510310
TU581656 other upstream 937699 45274638 ~ 45276387 (-) True znrf3
TU583050 other upstream 2022949 46359888 ~ 46360886 (-) True apba1a
TU583053 other upstream 2033751 46370690 ~ 46430360 (-) True LOC110526044
TU583552 other upstream 2573719 46910658 ~ 46910950 (-) True G514434
TU583955 other upstream 2679223 47016162 ~ 47016496 (-) True G514777

Expression Profile