RNA id: XM_036981752.1


Basic Information

Item Value
RNA id XM_036981752.1
length 2179
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC118965029
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 47346834 ~ 47349012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGTGTGCTTCATGGACGACATCCTCGTGTCAGCACCAAACATTGCAGAGCACCTTGTAGTGCTGGACAAAGTGATGTCAAGACTGGAGAAATACGGAGTGAGAATGAAACGCAGCAAGTGTGAGTTCCTCCAGGACTCAGTGGAGTATCTCGGATACAAGATTGATGCACAAGGCCTGCACCCAACCAACAGCAAGGTGGAAGCAATCGTAAACGCACCAGCACCCACAAATATCTCAGAGCTGAGGTCATTTTTGGGGCTCCTGAACTATTACGGAAAGTTTGTGGCAAACTTGTCCACATTGTTGCATCCGCTTCACCAACTGCTGCAGGCCGATACAAAGTGGAATTGGTCCCCACAATGCGAAGAAGCATTCAAGATGTGCAAACAGCGTCTGCTAAAGAGCAAGTGGCTTGCCCACTATAACACAGAGATGAAGCTGAGACTCGCTTGTGATGCATCTCCATACGGAGTAGGAGCCGTCATCTCACATGTTCTACCGCCAGGTGAAGAACACCCTATTGCATTTGCATCACGGACTCTGTCACCAAGTGAGAAAAATTATGCTCAAATTGAGAAGGAAGCCCTGAGCATAATATTTGGAGTGAAGAAGTTTCACAAATACCTCTACGGAAGGAAGTTCCAACTGCTGACAGATCACAAGCCTCTGTTGGCCATCCTTGGACCAAAATCAGCTATACCAACCCTTGCTGCACTTCGAATGCAACGTTGGGCTCTGATATTGTTAGCCTACGACTACGAGATTGAGTACAGACGATCCAGTGATCACGCAAATGCCGATGCACTATCAAGACTACCATGCAATAGTGACTCCGACAGTGAAGATGATAGAGCAGCCTTCCAGATCTCTCTCATTGATGAACTGCCCATATCTGCTTCTGACATAGCAGAGGAAACAAGGAAAGACCCAGTGCTTTCCAAAGTCTTGGACTTAACATTAGGCGGTTGGCCAACCTTCGTAAATTACGATAACCTTCGTCCATTCATCGACAAGAAAGACCAGTTGTCCACTGATCAAGGGTGTGTTCTGTGGGGATCAAGGGTGGTGGTACTTCACAAATTCCAGAGGAGACTGCTATCTGACCTGCATGAGGGACATCCAGGGATCACTCGAATGAAAGCACTCGCTCGCAGTTATCTGTGGTGGCCTGGACTGGATCAGGACATTCAACAGCATGTAGGCCACTGCTCACCTTGTGAAGCTGTTCGCAacaagcctgctgctgcaccTCTTCATCCATGGTCCTGGGCTGCTACACCTTGGGAACGCATCCATGTGGATTACGCCGAAATTGACAAGCAACATTTCCTTGTTGTCGTCGATGTCCATTCCAAGTGGATGGAAGTGTTCCCTACTCAACTGACCACAGCTGAGAAGACCATCAATCTTCTCAGACACCTGTTTGCATCCTTTGGACTAGTCAAGGAGCTCGTATCGGACAATGGCCCCCCGTTCACGTCAAACGATTTTGAAATGTTTCTCAAGAACAACGGAGTAAGGCACATCCTGTCACCACCTTACCATCCGGCATCAAACGGAGCAGCGGAGAGAGCCGTGCAAACCTTTAAGAAGGCCTGGACTAGACTCGAGGTTCAGTCTGTGCCCATCCACCAAAGGCTTCCCCGGTTCCTGTTTACTTACCGTAACACCCCACACACAGTAACGGAATGTACACCAGCTGAACTGTTTCTGAAACGCCAACCACGTACCCGCCTGACATTGTTGAAACCAGACTTGTCAAGCACTGTGGCAAAGCACCAGCTACAGCAGAAGAAAGCTCATGACAGACACTCAAAGACTGTCAGAGAAttcaaagaggaagagagggtgatgGTACGTGATTTCAGACACCCCAAGCGCCTGTGGAACTCAGGTGTGATCTTGCAACGCAGAGGACCTTTAACTTACCAAGTCCAAATTGGTCATCGCCAGGTCAACGTTCATGTGGATCATCTGCTACGGTCCAACGCCCCAGCAAAGACATGCCGAGAGAACAAGAACAATAACGACCCCCAGGACTATTCTCCTGACTGTGGATGTACGGGAGAGACAGAGCCTGACCTTCCACCCGaacctggcccaccacaggaaGCCCAAGAGGAGCGGAGATATCCTATTCGTCAGCGAAGGGCACCTCAAAAGCTTGACCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU584136 lncRNA downstream 49178 47297445 ~ 47297656 (-) True G514949
TU584132 lncRNA downstream 53973 47292620 ~ 47292861 (-) True G514945
TU584129 lncRNA downstream 56490 47289965 ~ 47290344 (-) True G514942
TU584128 lncRNA downstream 56960 47289666 ~ 47289874 (-) True G514941
TU584123 lncRNA downstream 62415 47281565 ~ 47284419 (-) True G514937
TU584199 lncRNA upstream 73072 47422084 ~ 47422584 (-) True G515001
TU584226 lncRNA upstream 130335 47479347 ~ 47488717 (-) True G515028
TU584237 lncRNA upstream 307437 47656449 ~ 47656937 (-) True G515039
TU584240 lncRNA upstream 317493 47666505 ~ 47667571 (-) True LOC118964884
TU584243 lncRNA upstream 327695 47676707 ~ 47677109 (-) True G515045
XM_021606655.2 mRNA downstream 290029 47045493 ~ 47056805 (-) True utp15
XR_002473865.2 mRNA downstream 366057 46976395 ~ 46980777 (-) False LOC110526055
XM_021606643.2 mRNA downstream 875702 46461363 ~ 46471132 (-) True rnf215
XM_021606642.2 mRNA downstream 875703 46461363 ~ 46471131 (-) False rnf215
XM_036981754.1 mRNA upstream 2699 47351711 ~ 47353889 (-) True LOC118965030
XM_036980273.1 mRNA upstream 158151 47507163 ~ 47511010 (-) True LOC118964878
XR_005052130.1 mRNA upstream 184804 47533816 ~ 47534526 (-) True LOC118964883
XR_005052131.1 mRNA upstream 316802 47665814 ~ 47666524 (-) False LOC118964884
XR_005052129.1 mRNA upstream 339639 47688651 ~ 47689252 (-) True LOC118964882
TU583955 other downstream 330338 47016162 ~ 47016496 (-) True G514777
TU583552 other downstream 435884 46910658 ~ 46910950 (-) True G514434
TU583053 other downstream 916474 46370690 ~ 46430360 (-) True LOC110526044
TU583050 other downstream 985948 46359888 ~ 46360886 (-) True apba1a
TU581656 other downstream 2070447 45274638 ~ 45276387 (-) True znrf3
TU584295 other upstream 625781 47974793 ~ 47976975 (-) True G515094
TU584332 other upstream 914981 48263993 ~ 48264977 (-) True G515122
TU584340 other upstream 943834 48292846 ~ 48297527 (-) False LOC110512142
TU584341 other upstream 943834 48292846 ~ 48293454 (-) False LOC110512142
TU584348 other upstream 968636 48317648 ~ 48318407 (-) True LOC110512142

Expression Profile