RNA id: XM_036955362.1


Basic Information

Item Value
RNA id XM_036955362.1
length 1875
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110498294
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63506786 ~ 63534703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAGACAGGCACTAAGACCCAACACTATTCTGTGGTTCCAGAGGAGGCTTCCCAGATCAAAACAGACTGGGAGAATTCCCACTATTCCACCTGTTCTATAGAGAAAGATAGAAGTTCTGCGTATTCCCGGCGAGATAACCGCTTTGCAGCATGGCAATGGAATGCATCAATAACTGCTGCAAAAGCTTCCTAGGCAAagacaaggcaatcaaacagcaAGCCAGTAGCGCCTATGCAGAGAGGAAGGCTGAGCTGTCAGGGGACAGTCATATCATCTATAACCCTGACTCCTCCCCCAACATGTGTCCCGGGACAACACCACACAGCACCCTGAAAAAGACTCCCCGTGGATCAGGTGGGAATATGAAGACTGGAACACAGAGTCTGAGTAAATCTATGTTTAATCTGTCTAACCCCAGCCTTCACAGCCACATACAGCGGTATGACAGTGTGTCCAACGTCCAGAGTAGCAGTGCTTCGTCCTCTACGAGGGACTCCCTGGGGAGCAGCCGTAGTCTTGAGTCCATCACGTTGTCAGGCGATGAGAGGGAGCTGGGGATGGTGTGTGTCCGGCTGAGTTACCAGGAGGCCCTGGAGCAGGTGTGGATCACGTTGGTACAGtGTAAGGATGTGTCCCTCGTTCAGAACAGCAGTGAGCAGCAGAAGATGAGCTTTAGAGGCATCATCACTATGACCAAACCAGTACAGTTCAAGAGCTCCGTCAAGGAAGGATCTCCGgACACAGTCTTCATGGAGACCTTTGTGTTTACGTTGCGGCTGCAGCAGCTGCGCTGCAGTGCTCTGGTATTCCGGCTGCAGACCCACCACCCCAGGAAGAGAACGGTGGCAGAGTGTGTCCTCTCCCTCAGACAGCTGGGCCCTGAGGAGACACAGCACTGGATGGAGCTCAGCCCCCCCTCCAAGACCACAGTGTGTCACGCTGAGCTGCACCTGGCCACCTGTTTCCAGCCTGTTAACGGACGCATCCAACTGCAGGTCCTCGCTGCCCAGAACCTCCCTGCTCCACTCAGCCAGGCGTTCTTTGTGAAGATAGAGATGCAGCTGCAGGGCACGGTGGTGATGAAGAAGAAGACTCACACCCTGAAGTCCTCCGGAGGTCAGCTGACCTGGACTGAGTCTTTCTACTTCCCCTTCGCTCTGGACCAGGGCTTCCTGCTGTCAGTCAAACTCTACAGCCGCAGTTCTGTCAGACGGAAACACTACCTAGGACAGGTTCACCTTGGCTTCGACAGCCCAACACAGGAAGCAGCAGAGCAGTGGAGGGACAGCATTTCTCACCCTGAGAAGATGGTGGCTGTATGGCACAGACTCAGCGGATTCTGACACACCTGTATAAATTCACACAGTGTCCCAAAGGAGTTGACAGCCTCACCTGTATCGCCACCTGTACTGCCACccagtggtataaagtacttaagtaaaaatactttagtaGTTTTTGGAGGGTATCTGTACTgtattttactatttatattgttTGGCAACTTTTAATttgacttcactacattcctgaagaaaataatgaCCTTGTATTGTTTTTGTAGATAAAGTATGTAGATTACTCATTTATGTTGCATAGACTTGTTTTGTGTATTGCCATATGTTCagctgatataatataatattttagAGGACAGATATttggcggcaagtagcctagtggttattgggccagtaaccgaaaggttgcaagttcgaatccccgagctgacaaggtaaaaaaaaaaatctgtcgttctgccccctgaacaagacagttaattAACCCAATGTTCCCCGCTAGGCTGTctatgtaaataagaatttgttcttaactgacttaaataatggtataataaaaaatataaaacatt

Function

GO: NA

KEGG:

id description
K17287 TC2N; tandem C2 domains nuclear protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885170 lncRNA upstream 4648 63501876 ~ 63502138 (+) True G1647558
TU1885153 lncRNA upstream 5586 63500950 ~ 63501200 (+) True G1647543
TU1885152 lncRNA upstream 5920 63500422 ~ 63500866 (+) True G1647542
TU1885166 lncRNA upstream 21009 63484960 ~ 63485777 (+) True G1647554
TU1885164 lncRNA upstream 21828 63484494 ~ 63484958 (+) True G1647553
TU1885193 lncRNA downstream 3770 63538473 ~ 63539065 (+) True G1647573
TU1885216 lncRNA downstream 18138 63552841 ~ 63556107 (+) False G1647589
TU1885215 lncRNA downstream 18379 63553082 ~ 63556107 (+) True G1647589
TU1885220 lncRNA downstream 32290 63566993 ~ 63567963 (+) True G1647592
TU1885221 lncRNA downstream 34024 63568727 ~ 63570341 (+) False G1647593
XM_036955360.1 mRNA upstream 6614 63435324 ~ 63500172 (+) False fbln5
XM_036955359.1 mRNA upstream 6614 63438062 ~ 63500172 (+) True fbln5
LOC110498409 mRNA upstream 92204 63380908 ~ 63414582 (+) False LOC110498409
XM_036955357.1 mRNA upstream 134451 63348949 ~ 63372335 (+) True rtf1
XM_021574913.2 mRNA upstream 160494 63339785 ~ 63346292 (+) True LOC110498286
XM_036955363.1 mRNA downstream 23100 63557803 ~ 63565484 (+) True plek2
XM_036955366.1 mRNA downstream 113666 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA downstream 113666 63648369 ~ 63719010 (+) True LOC110514319
XM_036955381.1 mRNA downstream 658806 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 659271 64193974 ~ 64201734 (+) True ccdc177
TU1885128 other upstream 114954 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 302729 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 429643 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 488098 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1013067 62487001 ~ 62493719 (+) True srsf5a
TU1886125 other downstream 593505 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1445661 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1927070 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 2009674 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 2043736 65578439 ~ 65582582 (+) True G1649309

Expression Profile