RNA id: TU2017195


Basic Information

Item Value
RNA id TU2017195
length 3473
lncRNA type inter_gene
GC content 0.41
exon number 6
gene id G1761111
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64129919 ~ 64179023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatctccctttattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgttctgtttctccctgtattatagtgtcctgtttctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtgttatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgttctgtttctccctgtattatagtgtcctgtttctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcccgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtgttATAGTGTCCTGATTCTCCCTGTATTacagtgtcctgtctctgtttctccctgtattacaGTGTcccttctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgatTCTCCCTGTATTACAGTGTccggtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtataatagtgtcctgtctctgtgtctccctgtattatagtgtcctgtttctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctttttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattgtagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtgttATAGTGTCCtgattctccctgtattatagtgtcctgtctctgcttctccctgtattatagtgtcctgtctctccatctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtgttATAGTGTCCtgattctccctgtattatagtgtcctgtctctgcttctccctgtattatagtgtcctgtctctctatctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgttctgtttctccctgtattatagtgtcctgtttctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctatttatccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtataatagtgtcctgtctctgtgtctccctgtattatagtgtcctgtttctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtataatagtgtcctgtctctgtgtctccctgtattatagtgtcctgtttctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattttagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtataatagtgtcctgtctctgtgtctccctgtaTTAAAgtgtcctgtttctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattttagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtttctccctgtgttATAGTGTCCtgattctccctgtattatagtgtcctgtttctccctgtattatagtgtcctgtctctgtttctccctatatTATAGTGTCCTGATTCTCCCTGTATAATAGggttctgtttctccctgtattatagtgtcctgtctctgtctctccctgtattatagtgtcctgtctctgtttatccctgtattatagtgtcctgtctctgtttctccctgtactatagtgtcctgtctctgtttctccctgtattatagtgtcctgtttctccctgtattatagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2017186 lncRNA upstream 16172 64112642 ~ 64113747 (+) True G1761103
TU2017169 lncRNA upstream 43261 64086035 ~ 64086658 (+) False G1761094
TU2017173 lncRNA upstream 43261 64086035 ~ 64086658 (+) True G1761094
TU2017166 lncRNA upstream 51700 64077733 ~ 64078219 (+) True G1761092
TU2017094 lncRNA upstream 63735 64064949 ~ 64066184 (+) True tfr2
TU2017204 lncRNA downstream 3279 64147043 ~ 64148392 (+) True G1761113
TU2017209 lncRNA downstream 10322 64154086 ~ 64154796 (+) True G1761117
TU2017212 lncRNA downstream 19499 64163263 ~ 64163935 (+) True G1761120
TU2017245 lncRNA downstream 61656 64205420 ~ 64206239 (+) True G1761149
TU2017056 lncRNA downstream 90341 64234105 ~ 64239420 (+) False G1761029
XM_036958415.1 mRNA upstream 64135 63893194 ~ 64065784 (+) False tfr2
XM_036958416.1 mRNA upstream 64135 63893333 ~ 64065784 (+) False tfr2
XM_036958417.1 mRNA upstream 64135 63956217 ~ 64065784 (+) False tfr2
XM_036956535.1 mRNA upstream 249937 63832555 ~ 63879982 (+) False ctc1
XM_036958414.1 mRNA upstream 316162 63664023 ~ 63813757 (+) True zgc:158659
XM_036958430.1 mRNA downstream 404178 64547942 ~ 64579984 (+) False LOC110510008
XM_036958431.1 mRNA downstream 408700 64552464 ~ 64579984 (+) False LOC110510008
XM_036958433.1 mRNA downstream 408703 64552467 ~ 64579984 (+) False LOC110510008
XM_036958434.1 mRNA downstream 409763 64553527 ~ 64578072 (+) False LOC110510008
XM_036958432.1 mRNA downstream 409763 64553527 ~ 64579984 (+) False LOC110510008
TU2016928 other upstream 280585 63841611 ~ 63849334 (+) True ctc1
TU2016932 other upstream 292063 63832597 ~ 63837856 (+) False ctc1
TU2016942 other upstream 578427 63549905 ~ 63551492 (+) True G1760941
TU2016847 other upstream 711660 63397235 ~ 63418259 (+) False G1760865
TU2016837 other upstream 757748 63367706 ~ 63372171 (+) True si:ch73-265d7.2
TU2017339 other downstream 273673 64417437 ~ 64418064 (+) True G1761231
TU2018536 other downstream 590944 64734708 ~ 64738114 (+) False LOC110500801
TU2018538 other downstream 590944 64734708 ~ 64738114 (+) False LOC110500801
TU2018534 other downstream 609945 64753709 ~ 64754495 (+) False LOC110500801
TU2018535 other downstream 610342 64754106 ~ 64754495 (+) True LOC110500801

Expression Profile