RNA id: TU2017057


Basic Information

Item Value
RNA id TU2017057
length 4397
lncRNA type antisense_over
GC content 0.44
exon number 9
gene id G1761029
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 64234105 ~ 64239420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTGTATATTCTTCCAGTGTTTAATAGTGAGACAGGATATAAAGACATATATATGGGGCCTGTCCCAAATGTACCCAATTCCCTTTTGAGGActactgcattatatagggaatagggtgtaattactactgcattatatagggaatagggtgtaattactactgcattatatagggaatagggtgtaattactactgcattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactactgcattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactactgcattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactactgcattatatagggaatagggtgtcattaccactccattatatagggaatagggtgtcattactactgcattatatagggaatagggtgccattactactgcattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactactgcattatatagggaatagggtgccattactactgcattatatagggaatagggtgtcattactactgcattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactaaggattatatagggaatagggtgccattactaaggattatatagggaatagggtgtcattactactgcattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactactgcattatatagggaatagggtgtcattactactgcattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactaaggattacatagggaatagggtgccattactaaggattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactactgcattatatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactactgcattacatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactactgcattatatagggaatagggtgtcattactactgcattatatagggaatagggtgccattactaaggattatatagggaatagggtgccattactaaggattacatagggaatagggtgtcattactaaggattatatagggaatagggtgtcattactaaggattatatagggaatagggtgccattactaaggattacatagggaatagggtgccattactaaggattacatagggaatagggtgtcattacttagcaagtagtgcactatatagggaatagggtgccatttgggacgaaaccCTACTTTTACACACAGACACGAGTATGTCAGACAGCTTTAAACATTATctatcatatatatatacatatatagctACAGCATTATCCATGGACAGTACCTATGTCCTATAGTATACATTATCACTGTGTAGTGACAGGGAAGGGTCCAGAAAGTCCCTGTCACTATAGGGACTAAaacgtgctcacacacacacacaggcacacacaatacacacgccccacacacacaaacacaaatacacacgccccacacacacacaaatacacatgccccacacacacacaaatacacatgccccacacacacacacacacacacacacacacacacacacacacaccacatacaaaaagcAGTAGAAAAATACTCTTAGAAAATTACAAACAACTGGAATGTATCATACAGACATTGaaagcataaacacacacacacacacacacacacacacacacacacacacacacacacacacacaccgtgctgTTTAAATACACGCTGTGTGTCTTTGCTGTTACAGCAGCGCCCCACAGTGGCTAAATGTACTGAAGGTGTATCATTATGTTACAGGATATctgaacgaacacacacacacacccacaccacacacactgtctctcaacACACATATTCActacaggttacacacacacacacacccacgtttAGAACACACCCACGTTTAGAACAGACATAAGCACACACACGTGTTGAGGGAGAGAGGCTGTGTGTCACGTGAAGTGTGTGCAACACGTGTTGAGGGAGAGAGGCTGTGTGTCACGTGAAGTGTGTGCAACACATGTTGAGGGAGAGAGGCTGTGTGTCACGTAAAGTGTGTGCAACACGTGTGTTGTGTGTAAGAAGTGTGACAGAGTGGCGATGATGACGTCATCACATCCAACAGACTCCAGACTCCTCCCAAAATACacttcacttcctgtttggaatgTTGGGGGACCACAGGAAGAGGAAGGGGCATCACCAAACGTCACTCTCGTTGGTTTTACACTCCTccggtgttgttgttgttgttcttctcCACCCGTTGTCTTCTTTCTCTCAGCGTTTCTGTCACGGGGTGGGGACACACAAAACTGGAACTCACCACGAGGTGCCCCTGTGGCTTgtgggtctgcgtacccacatccaaACCCATCCACCCACCATGCTCACTACGAGTTTAGATAGCAAGCCGCTGGACTAACAtaccaatcagtgtagatggaagGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGGAGATTGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGGAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGGAGATTGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGGAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGGAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGGAGATTGAAGGTGTGGAGGTCTGTCTGTATCAGTGATGATGGAAGGTGTGGAGGTCTGTCTCTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGGAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGATGATGGAAGGTGTGGAGGTCTGTCTCTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGGAGATGGAAGGTGTGGGGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGGAGATGGAAGGTGTGGAGGTCTGTCTGTATCAGTGTAGATGGAAGGTGTGGAGGTAGATCTGTCGGTGTATCCAGGGTGTGAAGTGTGTAACATTAGAGTAGACCCCAGGACCCAGGACTTTGGAGAAACACACGCTACCCCAGGACGTCAGGCCATACAGGGTCCAGCTCCCACCACTAGGCTCCTCACACACCAGAGGACCACCACTGTCACcctgggggacagagacaggaataATATCAACCATAATGGTCCTGTAGAAACTAACGATTGAAATGGAAAGATTGTGTCTGCTAAATTgcacacagtgccttcggaaagtattcagaccccttcactttttccacattttgttacgttacagccttattctaaaatggattcaattgttgtttttttgctcatgaatctacacacaatgccccataatgacatcacaaacactccataatgacatcgcaatgccccataatgacatcacaatgccccataatgacatcacaatgccccataatgacatcacaataccccacaatgacatcacaatactccacaatgacatcacaatactccataatgacatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2017245 lncRNA upstream 27866 64205420 ~ 64206239 (+) True G1761149
TU2017197 lncRNA upstream 55082 64129919 ~ 64179023 (+) True G1761111
TU2017278 lncRNA downstream 61633 64301053 ~ 64302274 (+) True G1761178
TU2017287 lncRNA downstream 83293 64322713 ~ 64325677 (+) True G1761186
TU2017327 lncRNA downstream 167101 64406521 ~ 64407066 (+) True G1761223
TU2017329 lncRNA downstream 169829 64409249 ~ 64452277 (+) True G1761225
TU2017333 lncRNA downstream 172393 64411813 ~ 64413336 (+) True G1761227
XM_036958415.1 mRNA upstream 168321 63893194 ~ 64065784 (+) False tfr2
XM_036958416.1 mRNA upstream 168321 63893333 ~ 64065784 (+) False tfr2
XM_036958417.1 mRNA upstream 168321 63956217 ~ 64065784 (+) False tfr2
XM_036956535.1 mRNA upstream 354123 63832555 ~ 63879982 (+) False ctc1
XM_036958414.1 mRNA upstream 420348 63664023 ~ 63813757 (+) True zgc:158659
XM_036958430.1 mRNA downstream 308522 64547942 ~ 64579984 (+) False LOC110510008
XM_036958431.1 mRNA downstream 313044 64552464 ~ 64579984 (+) False LOC110510008
XM_036958433.1 mRNA downstream 313047 64552467 ~ 64579984 (+) False LOC110510008
XM_036958434.1 mRNA downstream 314107 64553527 ~ 64578072 (+) False LOC110510008
XM_036958432.1 mRNA downstream 314107 64553527 ~ 64579984 (+) False LOC110510008
TU2016928 other upstream 384771 63841611 ~ 63849334 (+) True ctc1
TU2016932 other upstream 396249 63832597 ~ 63837856 (+) False ctc1
TU2016942 other upstream 682613 63549905 ~ 63551492 (+) True G1760941
TU2016847 other upstream 815846 63397235 ~ 63418259 (+) False G1760865
TU2016837 other upstream 861934 63367706 ~ 63372171 (+) True si:ch73-265d7.2
TU2017339 other downstream 178017 64417437 ~ 64418064 (+) True G1761231
TU2018536 other downstream 495288 64734708 ~ 64738114 (+) False LOC110500801
TU2018538 other downstream 495288 64734708 ~ 64738114 (+) False LOC110500801
TU2018534 other downstream 514289 64753709 ~ 64754495 (+) False LOC110500801
TU2018535 other downstream 514686 64754106 ~ 64754495 (+) True LOC110500801

Expression Profile