RNA id: XM_036959168.1


Basic Information

Item Value
RNA id XM_036959168.1
length 3225
RNA type mRNA
GC content 0.52
exon number 10
gene id bard1
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 34473620 ~ 34544232 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCACAGGCAGGCCCTTGTCCCTGACGCTTTGGCGGGAGAAGCGAAAAAAACGAAGAAGTGAAGCTACCGCATCAACACTCAGCTTTAGCGTCATTTCAAGATTTCAAACGTGTACGAATATAATTTCGAAATAGTGGAAAACGTAGCTACATTTCGTTAAATGGATCCTGATCTTTGCACCGACGAAGGCTGGACGAAAACGAAGGAGGCTGTCGCGCATTTTCGAAAACTTCTGCTGTGCTCAAAATGGCTGGAGAGGGATGTGTGGTGTGTCACAGTCCTGCCTGGGTGAAAGACATTCGGATCAACAGACAACTCAGCAATATCACAGAACTCTATGGCAACCTAGACTCACTGCTCAATCCCACTGGCTCCGATTACTCCGATGCCCTTCCCATTACACCACCAGCACAGTCAGATAAATCTGTCTTAAAGCACAAGAAGAACTTCAAGATCTGGTTTAGTCCCCGCAGCCGCAAGGTGCGCTGCCGGGTAGAGAAGCCTGCGGCGGTGCCTCTACCGGAGGTTGGGAGTGGGACTGTGAAATCTGCTCCAAGACATCCTGAGACACTACCTGAGTCTAAAGGCAAAGACCTGTCTGTCTTCAACTTCAACTCCTCCTCCCAAGACTctggctcctcctctcctcaaagGGCGACTAACTATGAAAAGAAGAAAGCGACTAAGAAGACGAGAAATGGTGGTGGTGTCAGGAAGCCTGCAGCTGTGGGTGGGCAGAAACCAACCAAGCATGAAGAAACCAAGCAGAATGTCAAGACACAGAGGCTGGAGGCAATCAACCAGCAGTGGGGCTTTGgcggagcgagagaaggagatgTCGGAGAGGAAGAAGAGCAGGTCACTGCAGAGGAAGGAGAGCACAGGTCTAGTAAAAGAGTTTCCTTCCAAAGCCCAGCCACCTTGCCTGCCACTGCGGAGCCTCAGAAGGAGGATCTCCCTCAGGGGAACACCATAATCCTCAGCCCCAGCAGAAGCATCCTGAAGGTGGTTCAGCCAGGAGAGAACGTCCCACTCTCTGAGGACCAGGACAGTCCAAGCCCACACACCACCCCTTCTCAGCTGGATAAGATATCTGCAAAGCAGCACTCCAAACCAAATGAAGAAATGACTAAAAAGCCTGACCTGCCCTCCCCTCCTAAGCGCACTCCCAAAAGATTCTGTGTGGAAGATAAAAACATCTCACAGTGTACCCCAAAGAAACCCAAGGCATCTCCTGGCCAGGGTAGACGTCCGGCAGTGGACAGGGTTGCACTCCCAGCCATGCATACCTCGCCCTCCCCCGCTGCCAGCCCCAGACAGGGTGGAACCTCCACCAGCACCAGGATATCCAGAGTAGAGCAGCAGTGGGGCAGTAGTCCGTGTTCCCCCGCCCCCCTGGGGAAGAGATCCCCGGGCAGACTGTCACAGAACAGCCCAGCGGTAGTGAAGAGAAACCACAAGGGAGAGACACCCCTACACCTGGCAGCAATAAAGGGTGATGTGGAGACAGTGAAGGAGCTCCTAGACCAAGGGGCTGACCCCAACCTGAAAGACAATGCTGGATGGACACCGCTGCACGAGGCATGTAACCTGGGCCACCTgggtgtagtggaggtgttggTGGAGAGGGGAGGCGTGCTGTTGAACACACCAGGCTACAAGAACGATTCTCCTCTACACGACGCTGTCAGGAACGGACATACTGGCATCGCCATGCTACTGCTGCAGCACGGGGCTTCACAGAGCGTCTTGAATATGTTTGGCCTTCGCCCTGTGGACTATGCCGTGAGCCCAGAGATGCAGGCAATCCTTCTGGCAGCCTCTGAAGGACCCCACCCAGTCAACTCACCTCTCAGTCCTTCACCCAGCCTCAATAAGGCCAGTGAAGGTGTGAGACTGGAGGAACAGGTAGTTGTACTGGGCAGTAAACTGTCCCAGTCCCAACAGACCCGGCTGGCCAAACTGGGACATCTCCTGGGAGGAAAGAGGGCAGACGCCTTCTCCTGCTCTGTCACTCATGTGGTGGTACCAGACGGGCCGATGCCCACCACCCTGTCCACTCTCCTTGGCCTCCTGAACGGCTGCTGGGTCCTCAACTTTAGCTGGGTAGAGGCGTGCCTGCAGGCAGATAGCTGGATCTCCGAGAGTGACCATGAAGCAGGAGCAGGACCGCAACGCAGCCGCATTAACAGACACAGCCTGCTGCCCCCGCTGTTGGACGGTTGTTTCTTCTACCTCATGGGCTCCTTCAGGAAGCCCCCCAGGGACGAGCTCCTCCAGCTGGTGAGAGAGGCAGGGGGCCAGATTCTTACCCGACAGCCCAAACCAGACAGTGATGTGACCCAGACCCTGTCTGCTGCAGCCTACCACGCCTCTCTGGGCTCAGACCAGGCCCTGTGTACCCAGTACATCATCTATGATCCCCAGGGCTCTTACAGGCCACCCAGGGTGAGGTTAGGAAAGGTGTGGTCAGCTCCATCTACATGGGTTGTAAACTGTATATCGGCCTTCCAGCTACTGCCAGTGCCTGAGCTTGAATCACAGACACAGCTGGTGTGTAATCAGTGAGGTGAAACATTCGCAACATTTCCgatagaaatgtaataaatagtGTTGTCATGATTGCCTATTCTACACGACAGACAATCATATCTGTTCTACACTATGTTTCTATGTAAATGTTCCGTAACCTTGCACCCTCTTTAACAGGCCCATGGTCTTTCCGTCTCCCACCTGAATATCAAGGTCTAATCAGAACACAGACAGCTGTGGTTGTAAAACTATAACCTTGACATAATAGAGATTGTACAGCCACAGTCAGTCcccaatctctgatgtctctggATTTGGCCTTAAATATATCCACGCCTTGTACCTGTAGCTCAAAGATAAGCTAGGGAAGTGTTTAATTTTATCCCCGCTCAATGACGATAGAAGATTATAAAAATGTTAGCTTTTCACTATTTTGAATGAAGGAGTGAAAAATCAAACTGTTTTCTCCTACTGAGACTCTTTATAACGTCTGTGCTTTTGAGAATGCCCTTTTCTTTGCAACTGAATTGTGACTGCCTCTTCTCCATTTGTATGACTTAAAAAAGAAAAATTATGAAACACTGCCTTTTATTAATACCAACGTCACCTCCTGCTGCTGCACACAGTTTTCTGTTTGGGCTTTTGAGAACGAATGGTATTCTACAAAATAAACGTTGTTGCAGCAACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2063098 lncRNA downstream 51512 34454807 ~ 34455027 (-) True G1803089
TU2063086 lncRNA downstream 59872 34446334 ~ 34446667 (-) True G1803079
TU2063059 lncRNA downstream 83857 34422467 ~ 34422682 (-) True G1803052
TU2063042 lncRNA downstream 96341 34409923 ~ 34410198 (-) True G1803035
TU2063035 lncRNA downstream 104884 34401431 ~ 34401655 (-) True G1803028
TU2063399 lncRNA upstream 25417 34569622 ~ 34569874 (-) True G1803350
TU2063378 lncRNA upstream 39360 34583565 ~ 34584030 (-) True G1803329
TU2063442 lncRNA upstream 95767 34639972 ~ 34657362 (-) True G1803393
TU2063444 lncRNA upstream 100433 34644638 ~ 34651986 (-) True G1803395
TU2063448 lncRNA upstream 125634 34669839 ~ 34671292 (-) True G1803399
XM_036959165.1 mRNA downstream 523037 33951053 ~ 33983502 (-) True LOC110502093
XM_036959164.1 mRNA downstream 523242 33951053 ~ 33983297 (-) False LOC110502093
XM_036959166.1 mRNA downstream 523242 33951053 ~ 33983297 (-) False LOC110502093
XM_021579613.2 mRNA downstream 578607 33687182 ~ 33927932 (-) True LOC110501786
XM_036959591.1 mRNA downstream 874361 33497664 ~ 33632178 (-) True LOC118936582
XM_021579617.2 mRNA upstream 41495 34585700 ~ 34592688 (-) True LOC110501791
LOC110502094 mRNA upstream 594125 35138330 ~ 35471205 (-) False LOC110502094
XM_021579628.2 mRNA upstream 1153381 35697586 ~ 35738804 (-) True LOC110501794
XM_036959179.1 mRNA upstream 1548983 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA upstream 1548988 36093193 ~ 36102895 (-) True tfcp2l1
TU2061248 other downstream 1546054 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 1552869 32950467 ~ 32953670 (-) True G1801352
TU2060961 other downstream 1728762 32759858 ~ 32777777 (-) True G1801071
TU2061092 other downstream 1802216 32703800 ~ 32704323 (-) True G1801195
TU2058841 other downstream 3464323 31039193 ~ 31042216 (-) True LOC110501748
TU2064031 other upstream 582274 35126479 ~ 35126833 (-) True G1803964
TU2064375 other upstream 663258 35207463 ~ 35219699 (-) True LOC110502094
TU2066167 other upstream 1513639 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 2033543 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 2391453 36935658 ~ 36936087 (-) True G1806393

Expression Profile