RNA id: XM_021579617.2


Basic Information

Item Value
RNA id XM_021579617.2
length 1567
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110501791
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 34585700 ~ 34592688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGATGCTTCACCCTCCCGGAAGTGCGTGGCTCAACGAGAAAATGGTGGACCACAGCTGCAGTGGATTTCATTCGCCCGTGTTGTGGATTTTTTCTGTTACATTTGTAGTCAAAATGTGTTTGATGGTTCTCGGGTTGAGAGCTGTTGATGCTGAGGGTCAAATTGAAGATGCATTCCGTGCAGGAAATACAGTATTTTCACCGACCACTGCAGCAGCACGGGATCTACGGTATCTTCTCTACGATGTCAACCCACCAGAGGGCTTCAACCTGCGTCGGGATGTCTACATCCGCATGGCATCCCTGGTGAAGACCCTGAGGAGACACGGTGACTGGGTGCTGGTGCTGCCCCCCTGGGGGCGTCTCTACCACTGGCAGAGCCCAGACATCCACCAGACAAGAATCCTCTGGGGAGAGTTCTTCAGCCTCACCAGCCTTCAGGGCAATGTGCCAGTCATAGAATACGAGGAGTTTATAGCCGAGTCTGGAGGTCCATTTATTGAACAAGTGCTGGTGCTACAGAACTACGCTGAAGGGTGGACGGATGGAAAATGGGAGGAGAAAGTGGATGAGAGACCCTGCGTTGAGCGGTTAATGTACTCCAAAGACAAACAGGGCTATTACAGaGGTTGGTTCTGGGGCTATGAGGAAACCAGGTGTGTGAACGTCACTTGTCTTTCAGCTCAGGGCCACGCCTCCATGCTGGCACCCCTCCTGCAGAACAACATCACATCAACGTCAGTGATGTTGGATAGAGCAGAGACTGTCCTCCATGATCACTACGCTGGAAAGGACTACTGGAATACTCGCCGCAGCATGGTCTTCGCCAAACACCTGCGTCTCCTAGGGGACGAGTTCCGAGCAAAGTACCTGAACTCCACAGACGAGCAGGACCAGACCGTATACAACGAGGACTGGACTCTCATTAAGAATAAGCTGGGTTCTGCCAGAGGGGGGCCATACCTGGGTGTCCACCTGAGAAGGAAGGACTTTATCTGGGGTCACAGAGAGGATGTGCCCAGCCTCAAAGGAGCTGTGAAGAAGATCATGAGCCTCATGAAGAAAACCAAACTAGACAGAGTCTTTGTGGCCACAGATGCAGATGATGAAGAGCTGGCAGAGCTGAAGATGATGTTACCAGAGATGACACGCTTTGAGCCCACCTGGGACGACCTGGAACTACTCAAAGACGGGGGCGTGGCTATCATCGACCAATGGATCTGCGCACATGCCAGGTATTTTATCGGAACATCCGTGTCGACCTTCTCCTTCCGTATccacgaggagagagagatattgggattTGAACCCAAAACCACCTACAACCGCTTCTGTGGGGACAGTGAGAAAGAGTGTGAACAGCCCACACACTGGAAAATAGTCTACTGACTCATCAATGCAAAACCCCACTCAAGACCTCTTTAAAACATGCCAAAAGCAGTGTTGAAGTTGACagttttttcattattttatatATACGCTACCgttaagtttggggtcacttagaaatgtccttgtttttaaaagagaaccttattttttttgtccatttaaaatgacatcaa

Function

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03691 POFUT; peptide-O-fucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2063378 lncRNA downstream 1670 34583565 ~ 34584030 (-) True G1803329
TU2063399 lncRNA downstream 15826 34569622 ~ 34569874 (-) True G1803350
TU2063098 lncRNA downstream 130673 34454807 ~ 34455027 (-) True G1803089
TU2063086 lncRNA downstream 139033 34446334 ~ 34446667 (-) True G1803079
TU2063059 lncRNA downstream 163018 34422467 ~ 34422682 (-) True G1803052
TU2063442 lncRNA upstream 47284 34639972 ~ 34657362 (-) True G1803393
TU2063444 lncRNA upstream 51950 34644638 ~ 34651986 (-) True G1803395
TU2063448 lncRNA upstream 77151 34669839 ~ 34671292 (-) True G1803399
TU2063449 lncRNA upstream 78681 34671369 ~ 34672336 (-) True G1803400
TU2063491 lncRNA upstream 167227 34759915 ~ 34768728 (-) True G1803441
XM_036959169.1 mRNA downstream 41468 34473620 ~ 34544232 (-) False bard1
XM_021579616.2 mRNA downstream 41468 34506539 ~ 34544232 (-) False bard1
XM_036959167.1 mRNA downstream 41495 34506539 ~ 34544205 (-) False bard1
XM_036959168.1 mRNA downstream 41495 34506539 ~ 34544205 (-) False bard1
XM_036959165.1 mRNA downstream 602198 33951053 ~ 33983502 (-) True LOC110502093
LOC110502094 mRNA upstream 545642 35138330 ~ 35471205 (-) False LOC110502094
XM_021579628.2 mRNA upstream 1104898 35697586 ~ 35738804 (-) True LOC110501794
XM_036959179.1 mRNA upstream 1500500 36093188 ~ 36102895 (-) False tfcp2l1
XM_036959177.1 mRNA upstream 1500505 36093193 ~ 36102895 (-) True tfcp2l1
XM_036959193.1 mRNA upstream 1513359 36106047 ~ 36217789 (-) False LOC110502096
TU2063359 other downstream 45527 34518506 ~ 34540173 (-) True bard1
TU2061248 other downstream 1625215 32958322 ~ 32960485 (-) False G1801331
TU2061278 other downstream 1632030 32950467 ~ 32953670 (-) True G1801352
TU2060961 other downstream 1807923 32759858 ~ 32777777 (-) True G1801071
TU2061092 other downstream 1881377 32703800 ~ 32704323 (-) True G1801195
TU2064031 other upstream 533791 35126479 ~ 35126833 (-) True G1803964
TU2064375 other upstream 614775 35207463 ~ 35219699 (-) True LOC110502094
TU2066167 other upstream 1465156 36057844 ~ 36059768 (-) True G1805927
TU2066409 other upstream 1985060 36577748 ~ 36578711 (-) True LOC110501806
TU2066670 other upstream 2342970 36935658 ~ 36936087 (-) True G1806393

Expression Profile