RNA id: XR_005038856.1


Basic Information

Item Value
RNA id XR_005038856.1
length 4749
RNA type mRNA
GC content 0.48
exon number 4
gene id si:ch211-67e16.4
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 50460094 ~ 50465680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCAAATGAAGAATATCTTTGTTTACATGGGTCCGAAGAAGCAGGAAACGCTTCAATTTGATTAGTTTAGAAATGATCTAGGCACGTTTTCTTGTTGAATCACTTTGCAAACAATGAAAAACGATCCAATTGTCTTGTTTAGTTAGATCTTTGGAGCATGGTGATGGTGTCAGCTTGCTAcgatggtagctagctagctagctatctccACGTTAGCAACAATCAGTCGCTAGCTAAACAGCTCACGGAGGACGACTGTCTATGATATTTGACCTCCGATGTTATTAAGATATTAAAATATTtataaaagtaaagaaaaaaaaTGGATATCAGTCTAACAGTTTCCCTAATGCAGGGCCAGATGGGTACCGTGATAGAGAGAGCGGTGAGTGCCGCTGTTGAGACGGTGTTAGGGGAGATGCTGAAGGTGGTCGGTATTAAATTCGACGAGCTGAAGAGGGAGGTCGCAGCAAAAGAAAAAGAGACCGAGAGCATCAGACAGATGCTGGACAAATCCCGATCTCAGATGAAGACAATGCGGAAGTACATGAACGCTCTGGGTGCCAGGCAGCAGGAGCACTCTGCCACTTACCAGACCAACCAGAGTACAGCATTCGGTCATTCGGATCCGCATAGACCTCACTGTTCCTCAGCGGCTGCATCCGAGGCAGCGCAGTCCTCTGGTTTATCACAACCACAGAGAAGGACGGTTACCAACACCCACATTGCCATTACAAATGGAAACGTACAGTCAAGGAATCACATCACTATCGCTCTACCCTCTGATAACTTGGCCAGATCCTCCCAACCTTCTGAGAATATTATAAGGGCCACATCATCATCGTCGTTTGACAGCCACGATGACCTGACTGCCACGGTCTCACAAGCTCTGGAGAGCCCATCATTGATCACCACTGTCTCTGCAATAAACAGTTCATCAGAGCACCTGGAACCTTTGAAAGAGGAGCCCCCAGCATCCCTGGACCCCGAGGTGTCTGATGAgagccagaggagggaggaggaagaagagtgtCAGGCTGAGTGGACCATCATTACACAGCCACCAGAGACCAGCACAGACCCTGGGGACCAGCTGGTCCTCTCCCCACCCAGGACTGACGGAGCAGAGTGCTTTGCCACCATGGCTGCTGGGAGTGCCCAGCCTCGGCTccaggtgaaagaggaggaggccGAGGTGGAGATCATCTGTATCAAGCAGGAACCGGAGGACGTTGAGAGTTTGCTGTTCAACCTGGCTGCTGAGGTCCTCAACTCCCAGGGCAACCTTTTAGACAGGCACACTCAGGGGAGCCTCCTGGACTGTCACAGGACAGTACCCTcacagggccagagagagaggacagtaccctcacagggccagagagagaggacagcatcCCTTTCCTCACAGAGCCAGAGGACATTAACAGAGCACACAGTGTTCAGCTCAGCCAGCCCTTGTACATATGGGCTGTCCCAGCCAGTGATGTCCATGTCACGCGGAGTTGCTCCCAGGCCAATGGTCCGTCCGTGGCCCAAAGACCTGAGTCTGTACGAGGAGTTTAAAATGAGACGAAGTGAGCTGAGGAGGAGGAGCCAGACCCGtcggagggagatggagaagaacCTTCCCCAGCCTCTATTAGCTGACCTGGTGAAGGAGAGACGAGAGAAGACCCGGCTCAGAGTGGCCCGCTGGAGAGCCAAGAGGAAGCTGCAGGCCTGCCAACTGACTCAGATGAGCCAGACACAACACCAGGCTGGACCTGGTCTGggccaggggaacagtgggctgGCGAATCATAGCCCGATTAgccaacacacacagcacaaaacCACAGGCCCCACTCAGACTCCGCAGAGGAACCGTGCTGCCCTCTCTCAATCGCAGTACAACAACAGTTTTTTGTACAACAGAAGTCACTGTGAGACTGGGGCTGGTAACGTTAACTACCCTCCTCTCCAGTTcaactcctcctctctaatgctggGACAACATGGAGGACACGATATGGAGCCTGTCATGAAATCATCCTCACAGCAGGGCCTCTCACTGACTGACTCAGAGCTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGTTCTACTCTACAGGAGAACAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACAGGAGATCAACATTGCCAGTTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACAGGAGATCAACATTGCCAGTTCTACTCTACAGGAGAACAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGTTCTACTCTACAGGAGATCAACAGTACCAGTTCTACTCTACAGGAGAACAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGTTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACGGTACCAGTTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACGGTACCAGTTCTACTCTACAGGAGATCAACAGTACCAGGTCTACTCTACCAGTAACAGGATAACAACAGTACCAGTTCTACTCTACAGGAGATCAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGTTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGATCAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACATTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGTTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGAACAACAGTACCAGGTCTACTCTACCAGTAACAGGAGATCCAATCAGAGGACACTTGTGTTGTAAGGAttctattccctatgtggtgctCTACTTTGGACAAGGGCCTTTTTGGCTTCCTAGGGAATACTTTGACTTATGGGACACAACCTATTACTTCTGGCTAATAACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2082576 lncRNA downstream 22677 50436976 ~ 50437417 (-) True G1819866
TU2082553 lncRNA downstream 58831 50400763 ~ 50401263 (-) True G1819844
TU2082549 lncRNA downstream 59404 50398482 ~ 50400690 (-) False G1819843
TU2082550 lncRNA downstream 59404 50399679 ~ 50400690 (-) True G1819843
TU2081798 lncRNA downstream 71544 50388307 ~ 50388550 (-) True G1819274
TU2082616 lncRNA upstream 29504 50495184 ~ 50495559 (-) True cd28
TU2082619 lncRNA upstream 34091 50499771 ~ 50503641 (-) True G1819893
TU2082620 lncRNA upstream 41837 50507517 ~ 50509978 (-) True G1819894
TU2082612 lncRNA upstream 55547 50521227 ~ 50533708 (-) True LOC118943619
TU2082641 lncRNA upstream 105173 50570853 ~ 50572380 (-) False G1819911
XM_036959481.1 mRNA downstream 216149 50122888 ~ 50243945 (-) True prkag3b
XM_036959479.1 mRNA downstream 216150 50122888 ~ 50243944 (-) False prkag3b
XM_036959480.1 mRNA downstream 216150 50122888 ~ 50243944 (-) False prkag3b
XR_005038852.1 mRNA downstream 216152 50122888 ~ 50243942 (-) False prkag3b
XM_036959089.1 mRNA downstream 979134 49470102 ~ 49480960 (-) True LOC118943599
XM_036959492.1 mRNA upstream 6067 50471747 ~ 50484670 (-) True si:ch211-67e16.3
NM_001124533.1 mRNA upstream 29387 50495067 ~ 50496854 (-) False cd28
XM_036959493.1 mRNA upstream 56324 50522004 ~ 50533748 (-) False LOC118943619
XM_036959498.1 mRNA upstream 255017 50720697 ~ 50753131 (-) False tmem237a
XM_036959499.1 mRNA upstream 255017 50720697 ~ 50753131 (-) True tmem237a
TU2081760 other downstream 155056 50301801 ~ 50305038 (-) True G1819250
TU2081603 other downstream 246208 50209474 ~ 50213886 (-) True G1819189
TU2081122 other downstream 740716 49717632 ~ 49719378 (-) True G1818802
TU2080662 other downstream 1293727 49165751 ~ 49166367 (-) True G1818417
TU2080631 other downstream 1333977 49125514 ~ 49126117 (-) True G1818393
TU2082615 other upstream 29504 50495184 ~ 50496991 (-) False cd28
TU2082808 other upstream 430892 50896572 ~ 50897153 (-) True G1820012
TU2082854 other upstream 557758 51023438 ~ 51026181 (-) True G1820053
TU2082908 other upstream 617309 51082989 ~ 51085809 (-) True carf
TU2083081 other upstream 960723 51426403 ~ 51427042 (-) True G1820212

Expression Profile