RNA id: TU2403222


Basic Information

Item Value
RNA id TU2403222
length 5176
RNA type TUCP
GC content 0.39
exon number 3
gene id LOC110508443
representative True

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 7993411 ~ 8044009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAGTGTCGTCATCATTGTGATTTTGTGTGTATTAAAAATGTACTGCACCATCATTATTCTAGTGTCTGTGCCTCCaacggtgtgtgtctgtgtgcctgtgtgtctatctgtgtgtgtctgtattccaGGACCAGAGGGCTGTAATCTGTTCATCTACCACCTGCCCCAGGAGTTTGGCGATAACGAACTGATGCAGATGTTCCTGCCCTTCGGCAATGTTATCTCCTCCAAGGTATTCATGGACAGAGCGACCAATCAGAGCAAGTGTTTCGGCTTTGTGAGCTTTGATAACCCGGGTAGTGCCCAGGCTGCCATCCAAGCCATGAATGGTTTCCAGATTGGCATGAAGAGACTCAAGGTGCAACTCAAACGTCCCAAAGACGCCAGCCGCCCTTACTGACACCCCCCAGTACAGtatctgtatttctcttccctcttctttccactttctccctcttcctttctcttcctccataGGTTTAATCAGAGGTATGGAGGACGTCTTTGATTGAATAAGGCATTTTGTGTTGAATAAGACATTTTGTGAAAGGAAAAAAGGAAAAAGTTATTCTGTTTTTAAGACAATGGAAAATAGACTTCATATGGGAGTTGGGAAGAGATCTCTTTTTATCTTCAATCATATCTGACTGGCAGAGGGAGGACTCACAGCTCTGCACCAGTGAAGGTTTGGCATCACAGATGAGAGAGCAATGGGATGATGCATAAGGATAGAACAAGACtttcaaaacaaacagaaaacttttttttaaagatacaaacacacaaaaaaaacacaatttagaATCTTTGGAGACTTGAGAGTGAAGAAGAACaccacagacagactgagaaacTGTGTTAAAAAATAATATGGATTTATGATGAACTCAGAAGAGTCTAGTGAACAAAAAGAGACTTCAGGTTTTTCCTACCATGAAATGGACAAATGAGGGTTGAAACTTGATCTGAGGATTCTAAGTATAtctggggaaaaaaatatttcttTCTCTGTGAGTCCTGAACCTGCTCTTTCTCAAGTTTCCATAGCAACCGAACAAACTGCACCCCCTTGGGATCTGAGGACCAAATGTTTTTCTCTTTAACAGGCTTGTACAAAATACTAACAAtcatataatacaatacagtataatgtttagtCTAGTACAAATTAACAATCATTAAATACTTAAATGCAGTATTCTACCTTTAGTTTAGTACACATAATAGTGACAGAGAAGTACTTCAGGTCGGCATTGGATTTATTCACCATCAGTGTACTGCTGACTACTAAGGAGTATGTAAATGTGAAATGGGATCATTTAGAATTCAGTTGGAGAGGTTAGTGAAGAAGAATGTTGCCCCGAGCTCTTTCTGTGGGATGGAATACATTATgaagtgtttgtttgtttgtttgtttgtttgaaagCCACCTTTTATCATCCTTTTACTGATAGGCTACACTTCCTCTTTGGGCACTCAGTTTGACCCTTGAACTTTTAGTTTTGTCTCCCTCTGTGCAGCAACCACTCTGAGCCTCCATTCTATTCAAAGTTGCCCATAGTCACAGATGTAGGATCAGCTCACTTTGCCCAAATACTAACCTTAAGCATTAGGAAGAAAATGCTAAACTGTACTTAGATCAGTCTGAAGGGGCTATGTCATCCTACTTCATTCTATTCTGCCTATAAAGCAAAGGCCATTGGCTCACATTCCGTTTCAGAAGCTTACTACAGTTCTCGGCTCAGGGGTTAAAAGGTCTCGAGTCAGGTGTGCCTAATGTTCGGATGAGATTGTCCATAGAAACTGATCTTAAGTCAGTTTTCTGGTTAAGGTGGTTAATGGTTAAAGTTAGGATTTGGGGAGGGCCAGCTGATCCAAGATCTGTGTGTCCACTTTGATTAGCCAGTAGATTTAGCAGGATGCATTGCTTCGTTCATTGGGTCTGTTTTGTGACAAAGAAAGTATTTGTGTATTTACATTTCAGGGATTATTTTAACGAGGGCCAGGGGATTtttctggtcaggtcacatgcTCCGGAAAAACTCCTTTACCTTACCATAACACAAAAAACCactagtacagatgtaggatcttaatttgagccagttttctacagcaggaaaatagtcctgcagcaacaggatattttaattattatgtggattatactgtaattaatggacatttttgtaggggttgataacaTTTGtagtaagggaaaatcaagtctgaaatttcaaagaggaaattacaaacttcagaagcctttttaaacctcaaatgtaccgcattgcaggaaagttctcctgcaacagggtgatgaaattaaaatcctacatctgtatggcaCAGGTTAGAATTTGTTTATGGCACAAGCTATTTTATCATTGTATAACGCTACTGTGACTTTTTCTTTTCAACATATATAACTGTATGGCTCATATCAATTTGAGTCCGCACTGCAGTACTATTCACACACATAAAACAGGACTAGCTTTTCTCAAGTAACTCAGACTCCTCTCACATAGATGCTCATGCTAGAAAGCCTCCCCTCACGTAGATGTGTGCCGTTTTGATGGAGAAGACTGGTTGAATATCAGCCAGTTATCTTGTGAGGGGAGGCGTCATCGTCAGCAGCACAGAGCGGTGCAGCATTAGAGTAGAAAGCCTTCTGATCCATTTGAGTCTGACTCCATTAGATTTTAAGGAGGTGCCTGCAGTCCCCTCTCACTTGCATTTGGGTGAATGTTTTATTcagtatggagagagggagcggagACTACTTTACTGGGAGTAGACTTCAAATCTGCTTTTAAATAGCTATACAAGGTCAAATGTTGAGCACAAGTCATTCTTTGTGCTGTGCAGGACAGGTTGGGAATGCTGTCACAGTACCTCCCTCAGGGAACACAAGAAACCAATGGAGGAACATCAAAACACACTCTAGAATACATTGGAGGATGATTCCAAGAGACACTCTAGAatgcagggatggagggagggaaggaagggatgttttctctcttttttccttCATTTTTTTGGTCATCATCACATATTCAATAGTGAACCATATTTTCACTAACTCCTAGTGAATGTTACTGTCTATTTTACTTACAGACCATTCCTGACCCTCATATAAGTGAATTTGCCAAGTAATGTTTAATCGTTCTATGAATTCTAATATGTACATTTAATTATCTTGTAACATTCCAGGCCAGTTGGCAGCCGAGCGATAAATATGAAGTAGCTATTTTAGTTTTATCGACATTAGTTTATTCACTGTGCACAGAATCCTAAACCAACCAGACATATGGATATACCAATGcacattgtaattattttcatGGATTTGAATCATTGTCTAAATTTTCGCCTACTTCTCATTAGCTAACTGCCAGCCTATTCGTTTTTATCTGCATGTTGTTTCCCCTCACACAGATGTATTCAAAGGAAGAAACGGCCATTTTGATTAGAGTCAAGGGTCAACTCCATTTCAATCACTTGTCAGTTGAACTGGCCATTATAATTTCTCTATAGGAATGTAGTTAAAATTCCTATATTGACATATTGACTGTAAAGACACCAATGTTGGTTTTGATGATGCCTCTGTGAAATGTTTACTGACCAGCAGCCTCTCACCACTGTTAGCAGCATCGAAATCGAGAGTTTGTCATTTGTCAAATTGCTATGGTCTGACAGGCTTTAACCCTTCTCGGGATTATATTTCTACGGTAAGCAGAGTTTGGCTTGCGACtgatgcaggaagacagtcaGTCTAATGTTTGATCTAGATCCTTAGGTAACAGCAATAGTCCTAGTTGCACTAAGAGACAAGCCGTGCACTACAGTAACCCTGACAAGTCCTTTGACCTTTGCTTGTCCTATAAACATAAAGCAGTAGCCTAAAGGCTAAAACGAATGCTATTATTGCCAAGCAGCTGGTTGGAAATGTacttgtatatttctatgttctATTCAGGTTCTGGTGTTATGTGCTTTTTCAGGGGTTGGGGGACATAAAGATAGTTTACTGTGCTTTTTCTATATACATTTATTAACAACTACCTGAATGAAGCCATGTTACTTTCTATCAAATgactacccactgggcaaaaactggttgaatcaacgttgtttccacgtcatttcaccccaaaaaaaatctatgtgatgagGTTGAATCAACGTGAAAATCTTATTGGATTTGGAAAAAGTCGTCAAAGTAAGGGAATCTTGTCATTTTTTTCATCCAACCTTTatcctaaatccaatgacatggtgacattttttgttgatttcaggttgaattcatgttagttgacaactcaactaaATGTAAATCCAAACTTGACGTTTAACTGATGTCTGTTCTCAGTGGGTACATGTATACTTAACATTCCTACTGCACTACCTCTATAAGGTGATGTGTATAAATCTTTTTAAAAAACAAGACCTCAATTTTCATTTTAAGATGATGGATTTTCATGTGTTTACTGCCAAAATCCACCTACGTCCATTCTTACTGCTCAACTGGAGGCTTGGGATGACAGGAGGGAGTAGGGGGTCATGACATTCTTATGAATGGCACTGTATGATCATGTATTATGTTTTGAATGCAGTGGGAAAATACAATATAGCTTGATGTAAATAGGAGATCTGTTTAATTTCATAATCTTGTCAGCACACAAATCTTTTCAGGTAATGGGGCGAGGCgtggaagagggatggagagggggtggggtgttTAAGGAGATACTGTCTGTGGGTGGGGTTGACATTTGAAGATGGTGTCTAGCTTCAGTGGTTTCTTAGCACAATATACAAAATGTATAGATGATTGAGAGACAGGGACAAGGACACTTGTGGGTAATGCTGAGGGTAGAAAAGGTGGACATGATCATGTCTGAGAAACCACAGCTCTCTTATCTTGTCTCTTCTATACTTGCTGCTTTGACAATTCCAATTTTCATATGGTTtaatttatttacttatttattagGTCATATTTAATTAAATGTGTCCTTCTATTTATTATTACCTATCATTATtatgatatttatttttatttcatgttttttttttcttcagatatGAATGATACAGATTGCTTACTGGgactttttttctctttctcctttttcAATTTTACAATAAAATATTCTAATAGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2403089 lncRNA downstream 57449 7924813 ~ 7935962 (-) True G2100940
TU2402988 lncRNA downstream 135949 7857231 ~ 7857462 (-) True G2100851
TU2402981 lncRNA downstream 136470 7853544 ~ 7856941 (-) True G2100844
TU2402968 lncRNA downstream 155018 7838136 ~ 7838393 (-) True G2100832
TU2402958 lncRNA downstream 162846 7830281 ~ 7830565 (-) True G2100822
TU2403231 lncRNA upstream 10203 8009068 ~ 8028624 (-) True G2101052
TU2403334 lncRNA upstream 57574 8056439 ~ 8056817 (-) True G2101155
TU2403346 lncRNA upstream 69672 8068537 ~ 8068752 (-) True G2101164
TU2403355 lncRNA upstream 79658 8078523 ~ 8078732 (-) True G2101173
TU2403366 lncRNA upstream 94964 8093829 ~ 8094465 (-) True G2101184
XM_021588959.2 mRNA downstream 888 7988636 ~ 7992523 (-) True LOC110508442
XM_036965956.1 mRNA downstream 13193 7883892 ~ 7980218 (-) True LOC110508438
XM_036965957.1 mRNA downstream 13194 7883892 ~ 7980217 (-) False LOC110508438
XM_036965958.1 mRNA downstream 13194 7883892 ~ 7980217 (-) False LOC110508438
XM_036965959.1 mRNA downstream 13194 7883892 ~ 7980217 (-) False LOC110508438
XM_021588967.2 mRNA upstream 63175 8062040 ~ 8064564 (-) False LOC110508444
XM_036966962.1 mRNA upstream 63175 8062040 ~ 8064564 (-) False LOC110508444
XM_021588965.2 mRNA upstream 63175 8062040 ~ 8066701 (-) False LOC110508444
XM_021588966.2 mRNA upstream 63175 8062040 ~ 8066701 (-) True LOC110508444
XM_036966305.1 mRNA upstream 262291 8261156 ~ 8275376 (-) False LOC110508446
TU2402916 other downstream 222228 7768416 ~ 7771183 (-) False LOC110508434
TU2402917 other downstream 222228 7768416 ~ 7771183 (-) True LOC110508434
TU2402839 other downstream 399596 7593294 ~ 7593815 (-) True G2100707
TU2402165 other downstream 786923 7203606 ~ 7206488 (-) True G2100109
TU2401301 other downstream 1554315 6426170 ~ 6439096 (-) True G2099318
TU2403426 other upstream 159354 8158219 ~ 8158518 (-) True G2101243
TU2403666 other upstream 239279 8238144 ~ 8239853 (-) True G2101464
TU2403860 other upstream 482867 8481732 ~ 8482413 (-) True LOC118936616
TU2404356 other upstream 977987 8976852 ~ 8978099 (-) True LOC110508274
TU2405120 other upstream 1179469 9178334 ~ 9180150 (-) True LOC110508459

Expression Profile