RNA id: XM_021589407.2


Basic Information

Item Value
RNA id XM_021589407.2
length 3296
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110508689
representative False

Chromosome Information

Item Value
chromosome id NC_048592.1
NCBI id CM023246.2
chromosome length 43716683
location 19439625 ~ 19458620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggaggagagatcaTCATAAAATAAACCAGGAGCGATTCTGGCAGCGGTAGtggcgctctctctcttcttcccacGTACCGCTTTAGCCGACCACCACAAATCCACACAGTGACAATAATTCATCTCTGCTTGCAACCACAACACCACACTATCTACCGGACTCTCGCTTCAGTGCTGCTACTTTCCGTTTAAAATACGCTCTGGATTAGCGAGGGACAGACAGCACAATATCCGGGGGCTACCACGACTCGTTCTTCTCCCCTCATAATCTGAATGACGGGCGGACGGTTCGATTTTGACGATGGTGGCACATATTGCGGTGGCTGGGAGGATGGAAAAGCCCATGGGCATGGCGTCTGTACCGGGCCCAAGGGCCAAGGAGAATACTCCGGGTCCTGGAATAATGGTTTTGAGGTAGTGGGGGTGTACACCTGGCCCAGTGGAAACGTGTATCAGGGTTACTGGGCACAGGGGAAACGACACGGATTCGGTGTGGAATCGAAGGGAAAATGGATTTATCGTGGTGAATGGACTCATGGATTTAAAGGTCGATACGGGGTCCGGCAAAGTCTCCACACGCCTGCTAGATACGATGGGACATGGAGTAACGGTCTGCAAGATGGATATGGAGTTGAAACGTATGGTGATGGAGGTACGTACCAGGGGCAGTGGACAGGAGGAATGCGACACGGTTATGGTGTGCGGCAAAGTGTACCTTACGGGATGGCTACGGTTATTCGCTCACCTCTTCGAACCTCGCTGGCCTCGCTCCGCAGCGAACAGAGCAACGGCACCGTCCTCCATGCCAACCTCGACCTGTCAGACAGCCTTGCCGGCACCAGAGGAGGCTTTGTTCTCAACTTCCACAGCGAAGGCGAAGGTGAGAAGAAAAAAGGCCTGTTCCGAAGAGGGTCCCTGTTCGGCAGCCTAAGAAACCTCAGAAAGTCTGACTCCAGGTCGTCCATATCAAGCAAACGCAGCTCCGCCCGCAGCGATGCCGCCAGCTCCATCAGCCGAATCAGCTCCAGTGATGCCAATTCCACCATCAGCTTCGGAGATGGAGTTGATGAGTACATGCCCCTGGAGGACAATGTAGATGCCACCACCACTGAGTCCTACATGGGGGAGTGGAAGAACGACAAGCGGAACGGCTTTGGTGTCAGTGAGCGCACCAACGGGATGAAGTATGAGGGAGAGTGGATGAACAATAAACGCCACGGCTACGGATGCACAATGTTCCCAGATGGCACCAAAGAAGAGGGGAAATATAAAAACAATGTGTTGGCGCGAGGCATCAAGAAACAGCTCATTCCTCTCAAAAACACCAAAACTAAACAGAAAGTGGATCGGGCTGTGGAAGGAGCCATACGGGCAGCAGCTATTGCCAAAACAAAAGTAGAAATAGCCACTTCAAGAACGGCTCACGCCAGGACTAAAGGTGATGCTGCTGACCAGgccggtcagtcagccagtcaggacTCAGACATCGCCAGGGCAGTGGCCAGGGAACTGTCTCCCAACTTCCATCAGCCAGGCCCTGATTATATAAAGCAGAGGTTCAATGAACCTATTGAACCTATTGTccaagaggagaagaaagagaagtcCTCCTCAAGTAGCCCTCATTTCTACCGTAAAGGCAcaaccccagaccactctccaACTGCGACTCCCCAGCCCTCTCccccaccaacacccccaccagcGCCAGCCCCAGAGCCCAAGAAGAGCCTCTTCAGCAAGCTCACCCCCAAGCCAGGGAAAGAGAATAAAACCCCTTCAGCAGAGAGCCAGGCCCCGGTCATCACAAAGGCAGTCTCTAAGACATCGTTGAAACAGGAAGTAAGACAAGAAGTGCCTCCCCAACCGAAAACTTTCAAGATGGCGGAGTCGGTCCCCGTCAGCCCTGGCAATGGACAGCTGCACACTGACACTGAGTACCACGGCTACTACATGAAGGCAGACGTGAAGATCCCCCCAGATGAACctgagggagtagaggaggagcaTGTTACTCCGTCCACCTTTGCCCAGATGACACAGCCCGCAAAACCTATGGCGCAATACAGGACACCCACCCCAAAACCTGGAGTGCCAAAGTCAGCAGCCAAAGAAAGCAAACCTGAGCTAACACTTAAGAAACAAGATTCGTATAAGCCAAAAAGCCTAGCAGAAACTAGGAAACAAGCCAGCTTGGAGATCACCACGGATTTCGTAGAGGAAGAGTCAGGTCCTAACTCAATACTGGTTGCCCTTGTAATGCTGTTGAATATTGGTCTAGCAATAATTTTTATCCATTTTTTAACCTGACGGAATCTGAACTGAGTGAACTCATCAAAACTAGTGGCATAGGTCCCTAACTCTCTGCATTTGCGTCAACGGCCTTTAAAAATGGCACCGGTCAAGCACAGACACAGGCAAAGGAGGACTGTAAATAGTGTGAAACATTGGAGAAAGATGAGACCAGGACCATTCGGCCCAGACGCTGCCCAGTTTCGCTGGCGATGATTTGTGACTCGCTTTGGTTCTGTGAAAGCTGAAGCAAGCAGTCATTGGgaaagcaacaaaaaaacaatctGCTGATCCAAGCTGTTTACCAGTCAAGTGCGTTGCCACTTCATATGCCCTGACAGGGGGGATGTGGAGGGGGGTGGGCAGGGGGGATATGTTCAGAGATGCACTTTTAGTTGACAGAAGCTAACAGCTGCCTTACTATTTTACCATCTGACGTTTTAGTGGGGAGATGCAGTGCACAAGGCTGCCAGAGGAATGTGTTTCGGCAGACTTTGCTGCCTTGGGAGTGCATCTCGGTGTGTCTCAGTGTTCACTATACTATTCACTTGGTCGATAAGAAATCATACATGTTTCGAAGTGGCACTCACCAGTCTTATTCCATTCCCCACTGCTAAAGCCTTGTCTAACTTCTCATGTTAGGACATGCTTGTGCATGGGGCTGTTTCAAGTGCATCTGTTTTATGTATTAGTTAGTAACTGTTAGGTTTTCATAATTTTTTTTCCCTTTGTCTGTTTATCCTTAGGTATTACAAATTATTAAGATAAGATTTATCTTATTATTATTCAAGTCTAGTCCATGCATTTCTCAAACTTTTTGAAGATCCTTCAAATTCAAAGAAATTTCCATAAAGCCTATGTTACACAAATCAGTTCATTTGAAAGAAATTGCAACAATTAATTCCAGTTATTGtgaggacatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2417434 lncRNA upstream 30820 19408527 ~ 19408805 (+) True G2113990
TU2417423 lncRNA upstream 39383 19400026 ~ 19400242 (+) True G2113979
TU2417191 lncRNA upstream 45102 19391382 ~ 19394523 (+) False G2113766
TU2417195 lncRNA upstream 45102 19391664 ~ 19394523 (+) True G2113766
TU2417183 lncRNA upstream 55317 19384066 ~ 19384308 (+) True G2113762
TU2417463 lncRNA downstream 13910 19468577 ~ 19468844 (+) True G2114016
TU2417486 lncRNA downstream 17903 19472570 ~ 19473353 (+) True G2114039
TU2417523 lncRNA downstream 76126 19530793 ~ 19531013 (+) True G2114074
TU2417529 lncRNA downstream 83219 19537886 ~ 19538323 (+) True G2114079
TU2417525 lncRNA downstream 89264 19543931 ~ 19546126 (+) False G2114076
XM_021589403.2 mRNA upstream 65057 19372009 ~ 19374568 (+) True LOC110508686
XM_021589394.2 mRNA upstream 117523 19217481 ~ 19322102 (+) False LOC110508681
XM_036966312.1 mRNA downstream 76376 19531043 ~ 19542347 (+) True LOC110508179
XM_021588702.2 mRNA downstream 131426 19586093 ~ 19589514 (+) True LOC110508279
XM_036966323.1 mRNA downstream 169165 19623832 ~ 19636825 (+) False LOC110508695
XM_021589419.2 mRNA downstream 202358 19657025 ~ 19667196 (+) False LOC110508697
XM_036966423.1 mRNA downstream 202358 19657025 ~ 19667196 (+) True LOC110508697
TU2416973 other upstream 363207 19076077 ~ 19076418 (+) True G2113578
TU2416413 other upstream 771129 18667115 ~ 18668496 (+) True G2113059
TU2415395 other upstream 1535701 17903198 ~ 17903924 (+) True G2112127
TU2414674 other upstream 1684044 17754937 ~ 17755581 (+) True G2111491
TU2414638 other upstream 1730996 17708256 ~ 17708629 (+) True G2111457
TU2417581 other downstream 168801 19623468 ~ 19636753 (+) True LOC110508695
TU2418949 other downstream 987066 20441733 ~ 20442169 (+) True G2115369
TU2419398 other downstream 1385903 20840570 ~ 20842003 (+) True LOC110508722
TU2420043 other downstream 1919828 21374495 ~ 21375078 (+) True G2116347
TU2422383 other downstream 3625749 23080416 ~ 23087819 (+) True smg7

Expression Profile