RNA id: TCONS_00064059


Basic Information

Item Value
RNA id TCONS_00064059
length 2344
RNA type mRNA
GC content 0.49
exon number 8
gene id XLOC_032969
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 34931597 ~ 34938746 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCTTTGCGGTCAGAGTCCCGGATGAATTCACGCCGGAAGAGAAGCGCAAGTCTTTTCCAGCCATCTTGTGGCATCTAGCAGCGAAGTGCTCGCTCAAGCCCCGTAGAATCGGAGGAGAATCCTGCTGAAAGGGGGCCATCATGCCCGGACATCTGCAAGAAGGTTTCGGCTGTGTCGTAACCAATCGGTTCGACCAGCTATTTGATGACGAAGAGGATCCGTTCGAGGTGTTAAAGCAGGcagaaaagaagaagaaggacGCGACCGTCCCTGGTGCCGCAAAGACCGCCGCGCAGGCTGCTAAGCAGCCCAAAAAGGAGTCGCAGAAGGAGAGGAGAAACCCGCTTCCCGATAAAAAGGAAGAAACACAAGCCCCCGTTCCTCTCAAGAAAGATGGCATGAGGAAGATGGGCCGCCGGCCTGAGCAGCAGGGTCAACAAGGatcccagcagcagcagcagcaacagcaggtGCCTCAGCAGCAGGCAGGACAGGGGGAGGGTCGTCCACCAGCAGACAGGCGGCCTGACAGGAGGCCACCACGTGAACGACGCTTTGACAAACCCGCTGATGAAAAACCTGCTGAGGGTGGAGAATTCTCAGTTGAGAAGACTATGGGTGACAGGCCATTCCGGGGTCGTGGAGGTCCCCGAGGGGGGCGCGGAGGGCGAGGCAGAGGTGTTGGCAGGACTGACGGCTTTGACTCGCGCGGCAAACGAGAGTTTGACAGACACAGCGGCAGCGACCGATCcAGCCTGAAAGCAGAGGAGAAACGTGGAGGCAGTGGATCTCATAACTGGGGCACTGTTAAGGATGAGTTGAGTGAGCTTGACCAATCAAACGTCACCGAGGACACCCCTGAAGGAGAAGAACACCCACCTGCTGACTCGGAGAACAAGGAGAATGAGGTTGAAGAAGCAAAAGAAGAAGGCCCTAAGGAGATGTCTCTGGATGAATGGAAGGCCCAGCAGGATAAAGAGAGAGCCAAAGTGGAATTCAACATTCGTAAGGCAAATGAGGGAGCTGACTGGAAGAAAGGATACGTTCTGCACAAGTCCAAGGCTGAGGATGCCTCTGCTGATGATGCTGCTGGTGACCATCACTTCCGCAAACCTGCTAATGACATCACGTCCCAGCTGGAGATTAACTTTGGAGATCTGGGCCGCCCGGGACGTGGTCGTGGAGGTCCACGAGGTGGCAGAGGTGGCCGTGGGGCGGCTGCTGCTACCAGACCACCTCGTGAACGCAGGCCAGACAAGgtCGGAGGAGTGTCTGTCCCTAACGTGGACGACCCAGAGGCTTTCCCAGCCCTGGCTTAAGCTGCACAGACAGCTCTTGGCTCACCCAGGAGGATCACTCCTCCATGGGTCCTTGTCTAAAAGGCTTGCATGCTAACGGATTCTTCAGCAGATGAAATGATGGAAGACTGTCATCCATGCCATTCACCCTTGAGGACTGAATTTTACctgttttagaaaaaaagaaggaaaattaaaaaaacaaaaacaaacaaaaaaaaaacaacggaCGGACTTCTTGCTGTTATGAAGCAAATTATTGGTCGAGGTTTTGTATTTAGACAAGGTAGCAGGGATGTTTTCATACAGTGTTTCTTttattgtttctttcttttgtttttcttttcagaaATGATGCATTGTTCATGGATACGTTTTGTACTGCTGCTTGAAAATATGCATTTCCAAAAATGGGTGTCAAGAGCGCACCAGTTTATCTTAAGGTGTCCCGTAGCTTGCTTGCTTTTTACACACAAATGCCTTGAAACAGGGGCCGCCCTTTTCAGGGATGTGATCTACCGGTTagtcttttaatttttaaaggttACTGCGTTTCTAAGGGAATTATAGAGCATTTTAGTTCTGGTATTAAACACCTCCCTTCCCTGAAAGCAAGGCTTTAGAACCGTAAAatcattttgattaaatgtacAATTTCTGATTCAGACCTTAAAGCTGGGATgtaattcaaatgatttttttattgaatgaCCACTGTAAGCTTCAAATGGTGTCTTTGATGCCATTGCCTCTGGTAACTCAGGATAGTATCGTACTTGTTACGCGAAGTTCTGGTGTAAATACAACAAGCAAGTTTACACACCGCACTCCTGTTTACTGATTAATGTAAGCCAGGTTATGGATAAATCCTGTTAGAAATGATGTTTTCTTTCTGCCCCATTGCTTTTACAACAGCTCTACTGCATACTTGATCTGAAAGAAACCCCTTCCTGTTCAGCGTGGAACAGCTGAGTGCTATTATAATGTGTGAATTCCTACCCTGCTATTAGACCTCTGTCAATAATTAAAAGATGGTCGATTCATA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7389 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1).

Ensembl:

ensembl_id ENSDART00000131610

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065188 lncRNA downstream 71007 34851894 ~ 34860590 (-) True XLOC_032968
TCONS_00064749 lncRNA downstream 113408 34817183 ~ 34818189 (-) True XLOC_032966
TCONS_00065187 lncRNA downstream 279458 34649795 ~ 34652139 (-) True XLOC_032965
TCONS_00065186 lncRNA downstream 753699 34158617 ~ 34177898 (-) True XLOC_032962
TCONS_00065185 lncRNA downstream 946932 33983870 ~ 33984665 (-) True XLOC_032960
TCONS_00064066 lncRNA upstream 8428 34947174 ~ 34954345 (-) False XLOC_032970
TCONS_00065189 lncRNA upstream 8428 34947174 ~ 34957476 (-) False XLOC_032970
TCONS_00064067 lncRNA upstream 12831 34951577 ~ 34957476 (-) True XLOC_032970
TCONS_00064073 lncRNA upstream 97769 35036515 ~ 35039045 (-) False XLOC_032972
TCONS_00065190 lncRNA upstream 146286 35085032 ~ 35090195 (-) True XLOC_032973
TCONS_00064058 mRNA downstream 71023 34847276 ~ 34860574 (-) False XLOC_032968
TCONS_00064053 mRNA downstream 93184 34823721 ~ 34838413 (-) False XLOC_032967
TCONS_00064054 mRNA downstream 93200 34825754 ~ 34838397 (-) False XLOC_032967
TCONS_00064051 mRNA downstream 710956 34213971 ~ 34220641 (-) True XLOC_032963
TCONS_00064050 mRNA downstream 789662 34138386 ~ 34141935 (-) True XLOC_032961
TCONS_00064065 mRNA upstream 4605 34943351 ~ 34958274 (-) False XLOC_032970
TCONS_00064068 mRNA upstream 21279 34960025 ~ 35032792 (-) True XLOC_032971
TCONS_00064069 mRNA upstream 94711 35033457 ~ 35052188 (-) False XLOC_032972
TCONS_00064071 mRNA upstream 94711 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064070 mRNA upstream 94711 35033457 ~ 35052388 (-) False XLOC_032972
TCONS_00064057 other downstream 93298 34833148 ~ 34838299 (-) True XLOC_032967
TCONS_00064056 other downstream 99251 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064055 other downstream 99251 34826655 ~ 34832346 (-) False XLOC_032967
TCONS_00064052 other downstream 287227 34644253 ~ 34644370 (-) True XLOC_032964
TCONS_00064033 other downstream 1015433 33914203 ~ 33916164 (-) True XLOC_032957
TCONS_00064091 other upstream 973875 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064094 other upstream 1239599 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064097 other upstream 1540447 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064104 other upstream 1794963 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 1805388 36744134 ~ 36744251 (-) True XLOC_032990

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_06695274_06700680.mRNA True 2510 mRNA 0.47 8 CI01000340 6694685 ~ 6701455 (-)
eurasian perch (Perca fluviatilis) TU183766 True 270 lncRNA 0.44 1 NC_053124.1 26269805 ~ 26270074 (+)
bowfin (Amia calva) TU183766 False 5320 lncRNA 0.46 8 CM030140.1 18741884 ~ 18753533 (-)