RNA id: TCONS_00064098


Basic Information

Item Value
RNA id TCONS_00064098
length 1426
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_032986
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 36551083 ~ 36552844 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAGTTACTGTGGGAAAGAAAGTTTGGGAAGTTTCACACGAGCCGTTCGCGTGCAGCCGGAGATATAAATAAGACCAACACGACGCTGAGGCAGGCAGTTGCTACGACCGCTGGCGAACGGTGAAATCAGAGACTGTGACATCATTGCCGCACCAGTTGAACTCGGGACACTTCGTGCGGATATCCATTCATAACTGGAACTGTATCAGCGTACTTGACAGCGTTTACTCCACTAGAAGCAGCTGTGCGGGAGGATTTCTTTTTATAAACAAGATCACGAAAGGATACTTCCCAGAGAAGATGCCTGCCGATATCATGGAAAAAAACTCCTCTTCTCCGGTCGCCGCGACTCCGGCGAGCATGAACACTACACCTGATAAACCCAAAACGGCTTCGGAACACAGAAAGtcTTCTAAACCCATTATGGAGAAAAGAAGAAGAGCGAGAATCAACGAAAGCTTGGGTCAGCTGAAAACGTTAATCTTGGATGCTCTGAAAAAAGATAGCTCCAGACACTCTAAACTTGAGAAAGCCGACATCCTGGAGATGACAGTGAAACATCTCAGAAACATGCAGCGCGCACAAATGACCGCTGCCCTAAACACAGATCCCACCGTTCTTGGGAAGTACCGAGCTGGATTCAGTGAATGCATGAACGAGGTTACCCGGTTCCTGTCCACATGTGAAGGGGTTAACACCGAGGTCAGGACTAGGCTGCTAGGTCACCTAGCCAGCTGCATGACACAGATCAACGCCATGAACTATCCAACACAGCACCAGATACCTGCCGGGCCTCCTCATCCATCCTTCAGTCAACCCATGGTTCAGATCCCCAGCGCGACTCAGCAAGCCAACGTTGTGCCTCTTAGCGGAGTCCCCTGCAAAAGCGGCTCATCCTCCAACTTGACTTCTGACGCAACTAAAGTATATGGGGGTTTCCAGCTTGTGCCGGCAACCGACGGACAGTTCGCCTTTTTGATTCCCAACGCTGCCTTTGCTCCAAACGGCCCTGTTATTCCAGTCTACGCAAACAATTCCAACACACCGGTTCCGGTGGCCGTTTCTCCGGGAGCACCGTCCGTCACGTCAGACTCCGTTTGGCGGCCTTGGTAGACTccgaggagaaaaaaaaactcttaaaagactcttaaaaaacaaatgacacttgtttTCTTTGTTCAGCGTtactttttttgtgctttttgtataaagagattgtgttggttttatgAGATGATGCACTATATTTGTATAGATCAAAAGGCAGAGAAGTTCATATTgaaataagttttgtattgttgAATTCCGTtcaatgcatttttatatttgcgGTATCTTTTCCACGTTGTGATGCCAAAGATATGTTGAATGCGCTTTCAAGTTTCTTCTTTTTGGAAgacaaataaatgacatttgaaaTGAAAA

Function

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0001757 somite specification biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-144 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including Notch signaling pathway; nervous system development; and somite specification. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; mesoderm; nervous system; neuronal stem cell; and pectoral fin. Orthologous to human HES1 (hes family bHLH transcription factor 1).

Ensembl:

ensembl_id ENSDART00000023613

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00065193 lncRNA downstream 157588 36386292 ~ 36393495 (-) True XLOC_032984
TCONS_00064095 lncRNA downstream 260458 36287538 ~ 36290625 (-) False XLOC_032983
TCONS_00065192 lncRNA downstream 261209 36287886 ~ 36289874 (-) True XLOC_032983
TCONS_00064096 lncRNA downstream 261222 36287871 ~ 36289861 (-) False XLOC_032983
TCONS_00064751 lncRNA downstream 426193 36121319 ~ 36124890 (-) True XLOC_032981
TCONS_00065194 lncRNA upstream 68466 36621310 ~ 36628097 (-) True XLOC_032987
TCONS_00065195 lncRNA upstream 789484 37342328 ~ 37344594 (-) True XLOC_032992
TCONS_00064129 lncRNA upstream 1195711 37748555 ~ 37749697 (-) True XLOC_033005
TCONS_00065196 lncRNA upstream 1579667 38132511 ~ 38358080 (-) False XLOC_033006
TCONS_00065197 lncRNA upstream 2206702 38759546 ~ 38763847 (-) False XLOC_033009
TCONS_00064092 mRNA downstream 353031 36127505 ~ 36198052 (-) False XLOC_032982
TCONS_00064093 mRNA downstream 368968 36131031 ~ 36182115 (-) False XLOC_032982
TCONS_00064085 mRNA downstream 771735 35675784 ~ 35779348 (-) False XLOC_032978
TCONS_00064086 mRNA downstream 812247 35675874 ~ 35738836 (-) True XLOC_032978
TCONS_00064082 mRNA downstream 1062903 35459369 ~ 35488180 (-) False XLOC_032977
TCONS_00064102 mRNA upstream 165141 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064101 mRNA upstream 165141 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064100 mRNA upstream 165141 36717985 ~ 36795219 (-) False XLOC_032988
TCONS_00064103 mRNA upstream 167319 36720163 ~ 36795160 (-) False XLOC_032988
TCONS_00064107 mRNA upstream 217789 36770633 ~ 36795111 (-) True XLOC_032988
TCONS_00064097 other downstream 48753 36479193 ~ 36502330 (-) True XLOC_032985
TCONS_00064094 other downstream 353319 36178345 ~ 36197764 (-) True XLOC_032982
TCONS_00064091 other downstream 637576 35912621 ~ 35913507 (-) False XLOC_032980
TCONS_00064062 other downstream 1612376 34932623 ~ 34938707 (-) False XLOC_032969
TCONS_00064061 other downstream 1612390 34931950 ~ 34938693 (-) False XLOC_032969
TCONS_00064104 other upstream 180865 36733709 ~ 36733826 (-) True XLOC_032989
TCONS_00064105 other upstream 191290 36744134 ~ 36744251 (-) True XLOC_032990
TCONS_00064106 other upstream 217095 36769939 ~ 36770069 (-) True XLOC_032991
TCONS_00064111 other upstream 886411 37439255 ~ 37439370 (-) True XLOC_032996
TCONS_00064112 other upstream 894184 37447028 ~ 37447143 (-) True XLOC_032997

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_07543307_07544545.mRNA True 1308 mRNA 0.46 4 CI01000340 7543019 ~ 7544752 (-)