RNA id: XM_039822376.1


Basic Information

Item Value
RNA id XM_039822376.1
length 1608
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC120572868
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29193810 ~ 29202524 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccgtggtccagagcaacggggtctattggtccattatatactgtctatgcgtGGAGCACACTGTGGACACCGGTGGACACACGTGTCATCGAGAAATAAAAAcTGACCGCCAAAAAAACctcaaagaaaaagaagaagcgaGTACCAACAACAAGTTCTCTGTTCAACCATTGGAATGCACGGGTCCTTTAGGATGAAAGAGATTTTGGGTGTACTTCTGCTGGTCAGTATATGGATACGGACTACTGACGCTGTTAGGAACACAGAATTACGGTGCCCAGATACATCGTTGGATGCAGAAGTTGACAAGACAGTAATTCTACCGTGTTGGACTGTGCCCAAAATGGATGTCGGCAACAAAGTGGAGTGGGTGCTTAATGATACCGTTGATGTCCATTTGCTCCGTAAGGGAAAACATGAGTTTGATGATCAGGGGAAGGACTACAAAGACAGAACATCTCTTTTCAACAGTGAACTGGAAACAGGAAATTGTTCACTGCGTCTGAAAACCAAGATGTCTCATACTGGGAGATACCGCTGTACTGTTAGAATTGGAGATGAGACAAAACACTGTTTTATATCCCTGACCGTCCATCCACATGAAAGAAGCAACACTACTCAACTCAATCTATCAGATAGTACCAACTCTCCAGGTGGTAACAAGGACTCCACTTTTCCTCCGGGTGGCATCGTCGGCATCGTCTTCGGCATCGTcggcatcatcatcatcatcattctgATCTGGAAGCGTAAAACGTGCTcTGAAGTTTTGGGTGGAAAGCGGCCCTGGCCATTCCCTTTTCCACGCCCTCCCTGCTGTCCATCTGGTGAAGTTGTTCTGCAGATCGACCCAGATGATCCGGTGGCTCAGCCCAGGCCAGGGCGTACGGAGGTTGGAAGAACTGGACACCAAGAAAACACGTGAGACTGGAAGGGATCAGGGAGCCAAATCCTCCAGGAGATGTCAACATGTGAAGCAGGGACATCTGTAGTCTTTATGTCCAGTCTGCGGCCAGTCTCCAAACTACTTTTTGACCGATTCCACTGTCACAGACTAATGTCCAATATAATAATGAAATCCTGAGAGTTTTGCTAGAATCGGGGCGCTCCCGTCATCTCCATCGTTTGCTAAGGTCATAAAACTCACTCCCAGTCAGTCTTTTCCCGTCTGGACGCTCAgacaaaatcaaacgtgtttAATTTAAAGTAAGTTTTAAGTCTTAGTAGTGTagttaaatcatgtgaacattgtcaacaaccaatgggcagtctccctccagcaccaaacggGAAGCAGCAAACCGGCTAGAGACTGGTGTTTATGGTTGCTATTGCAACCTACGCTAAAGTTAAGCTAGGTTaaatttttcaaaaacaaatttgGTTGTAGTCCTGCAACGTGGGACtctgcaagatccccagtctttaccTATTATGTCTTTAACGTTATGTCTTTAACGAGTTTTCTCAAAGTCTGTTCAAGTCTTTCCCTGCCAAAAGTACTTCATTATTACATTCCAGTAAAACAAGCTAAGGTAAATATTATTGCACTGCCCTGCTATAACTGTCACAACagagggtcctttgcaccatgacctcgagccaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198696 lncRNA upstream 19959 29173554 ~ 29173851 (+) True G147129
TU198581 lncRNA upstream 97210 29096270 ~ 29096600 (+) True G147042
TU198569 lncRNA upstream 128301 29047895 ~ 29065509 (+) True G147035
TU198549 lncRNA upstream 252095 28937066 ~ 28941715 (+) True G147017
TU198539 lncRNA upstream 290471 28891335 ~ 28903339 (+) True G147007
TU198680 lncRNA downstream 5887 29208411 ~ 29217804 (+) False LOC120573012
XR_005641586.1 lncRNA downstream 8238 29210762 ~ 29235418 (+) True LOC120573012
TU198788 lncRNA downstream 88926 29291450 ~ 29426726 (+) True G147198
TU198798 lncRNA downstream 150415 29352939 ~ 29362913 (+) True LOC120572959
TU198800 lncRNA downstream 150415 29352939 ~ 29358503 (+) False LOC120572959
XM_039822393.1 mRNA upstream 10463 29174343 ~ 29183347 (+) True LOC120572882
XM_039822394.1 mRNA upstream 10463 29174343 ~ 29183347 (+) False LOC120572882
XM_039822395.1 mRNA upstream 10463 29174343 ~ 29183347 (+) False LOC120572882
XM_039821455.1 mRNA upstream 102860 29080213 ~ 29090950 (+) True LOC120572237
XM_039821456.1 mRNA upstream 102860 29080213 ~ 29090950 (+) False LOC120572237
XM_039822380.1 mRNA downstream 51557 29254081 ~ 29260458 (+) True LOC120572873
XM_039822381.1 mRNA downstream 51557 29254081 ~ 29260458 (+) False LOC120572873
XM_039822383.1 mRNA downstream 135104 29337628 ~ 29342680 (+) True LOC120572875
XM_039822384.1 mRNA downstream 135104 29337628 ~ 29342680 (+) False LOC120572875
XM_039822436.1 mRNA downstream 153702 29356226 ~ 29357440 (+) True LOC120572916
TU198568 other upstream 128301 29029482 ~ 29065509 (+) False G147035
TU198572 other upstream 128301 29029482 ~ 29065509 (+) False G147035
TU198574 other upstream 128301 29029482 ~ 29065509 (+) False G147035
TU198224 other upstream 542297 28638750 ~ 28651513 (+) False tec
TU198769 other downstream 66890 29269414 ~ 29480487 (+) True G147192
TU198771 other downstream 211788 29414312 ~ 29421799 (+) True LOC120572956
TU198923 other downstream 370903 29573427 ~ 29618152 (+) True G147303
TU198920 other downstream 472789 29675313 ~ 29680473 (+) True clrn1
TU198992 other downstream 489302 29691826 ~ 29695750 (+) False LOC120572592

Expression Profile