RNA id: XM_039822398.1


Basic Information

Item Value
RNA id XM_039822398.1
length 1262
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC120572883
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29911422 ~ 29934098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catcactgtcactggtggaccagtgatactgcagagtcctgtcctccctgtgacggagggagaagacctcactctgacctgtaaaacaaagaggtcctccaacctcccagctggtttctataaagatgCCTCCTTCATTGGGAATGAacctgcaggtcacatgaccatccCCAATGAATACCTCTACAACTGGGTCCCTGTCACAGttctgacCTCACTGCTGAGCAGCACAACAAACCAAGCCTCTCTGACTGTGAGACCCAGCAGCTCTCAGATGTTTGAaggacagtctgtctctctgagctgtgaggaggacaacagctctgctggatggactctgaggaggaacacaACCAGAGAAACCAGGACTCAGTGTGGAGATGGCTGGGGAAGACCTGCTGGTTCTTCCTGTAACATCAGCTACATGGTCTCACGGTACAGTGGAGTttactggtgtgagtccagagagggagcaaccagtaacagcatcaacatcactgtcactggtggaccagtgatcctgcagagtcctgtcctccctgtgatggagggagaagacctcactctgacctgtaaaacaaagacgtcctccaacctcccagctggtttctataaagatggctccttcatcaggactgagcctgcaggtcacatgaccatccaccatgtttccaggtctgatgaaggcctctacaagtgtctcatcagcagtgttggagagtctccacccagctgggtctctgtcacaggtgAGGAGGTTACCTTTGATTTCAGGAGTTCATTCATCCAGATATTCACCTGACAGCTGATTCTCTCTACAGAGAAACCTCCAACTACAGACCCACCAACCTCAGACCACCTCCCCCTTGTGTTCAGAGTAGTCGTCCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTCTTTATATCGAGGCAGGACCACAGGAAATGGCCTacctgttgccatggtgatgacCTCGCCCACCCAGGCTGAGGAGGGATTGGATGATGAATATGAGAATGACATCACCGCTGTCACCAGAGAGCATCACTTCTGAACTGATCAGAAAAGAAGCTGAAATCTCCGTAGATCAGAAACAGTTCCCCGGCCGTCTTGATATAATTATGATTTAAACATATTCAATATGAAGTCATTGCTCCTTTACTGCCAGCCACAGCTATCTCTGTAATCCTGAATATTTTACATTATAAgaataaagcttttttttcccGTAGTTTTTCATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641553.1 lncRNA upstream 114 29908841 ~ 29911308 (+) True LOC120572980
TU199051 lncRNA upstream 24860 29840492 ~ 29886562 (+) True G147365
TU199018 lncRNA upstream 32842 29872424 ~ 29878580 (+) True G147349
TU199021 lncRNA upstream 33408 29876238 ~ 29878014 (+) True G147350
TU199087 lncRNA upstream 48485 29853325 ~ 29862937 (+) True G147381
XR_005641609.1 lncRNA downstream 3970 29938068 ~ 29938474 (+) True LOC120573035
XR_005641582.1 lncRNA downstream 24857 29958955 ~ 29965038 (+) True LOC120573008
TU199115 lncRNA downstream 57002 29991100 ~ 29994994 (+) True G147396
TU199113 lncRNA downstream 94945 30029043 ~ 30029837 (+) True G147394
TU199118 lncRNA downstream 107734 30041832 ~ 30042349 (+) True G147399
XM_039822466.1 mRNA upstream 28027 29878869 ~ 29883395 (+) True LOC120572934
XM_039822403.1 mRNA upstream 85990 29823219 ~ 29825432 (+) True LOC120572888
XM_039822180.1 mRNA upstream 172234 29717852 ~ 29739188 (+) True LOC120572760
XM_039821914.1 mRNA upstream 215422 29691329 ~ 29696000 (+) True LOC120572592
XM_039821913.1 mRNA upstream 220577 29675313 ~ 29690845 (+) False clrn1
XM_039822281.1 mRNA downstream 5096 29939194 ~ 29953407 (+) False LOC120572819
XM_039822282.1 mRNA downstream 5096 29939194 ~ 29950579 (+) True LOC120572819
XM_039822446.1 mRNA downstream 17051 29951149 ~ 29952925 (+) True LOC120572923
XM_039822482.1 mRNA downstream 67684 30001782 ~ 30002481 (+) True LOC120572948
XM_039821918.1 mRNA downstream 68278 30002376 ~ 30027881 (+) True fer
TU199012 other upstream 50530 29748766 ~ 29860892 (+) False G147348
TU199023 other upstream 114290 29750089 ~ 29797132 (+) True G147352
TU198992 other upstream 215672 29691826 ~ 29695750 (+) False LOC120572592
TU198920 other upstream 230949 29675313 ~ 29680473 (+) True clrn1
TU198923 other upstream 293270 29573427 ~ 29618152 (+) True G147303
TU199070 other downstream 14821 29948919 ~ 30002501 (+) False G147371
TU199111 other downstream 76537 30010635 ~ 30012296 (+) False fer
TU199110 other downstream 101475 30035573 ~ 30043707 (+) False prpf4
TU199109 other downstream 101802 30035900 ~ 30043707 (+) False prpf4
TU199247 other downstream 606843 30540941 ~ 30542509 (+) True G147478

Expression Profile