RNA id: XM_039822466.1


Basic Information

Item Value
RNA id XM_039822466.1
length 926
RNA type mRNA
GC content 0.60
exon number 4
gene id LOC120572934
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 29878869 ~ 29883395 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctccatccatctctccGTATCGTGTGACTGCAGGTTATCGTCTCCCAGAGTTGAGTCTGAAAGGCGCGGCCGCGGCCGACCTTCCCTCCGAGAGAAGCCTCCTCTACTCCTCTTCAAGGTCTGCGTGCTGGAGGACTCTCCGACAGACAAGCTGTCTAACAAAGTGTTTCTGAAGTCGCGGGCGCGAGACCTGCCGTGTCCCCGCGGGCTGACGGAGGAGGACTTCCTGTCCCTGCTGCGCTCCAGCTTCCCCCAGCTCGCCGGAGACGACAAAACCTTCGTCATCTTCAAGTCGGACCGCAGCCGCAGACTCCAGAGACTCAAAGTGAAGAAGATGACGCCGGAGAATGTCATCAGGGTCACCAAGTTCCTCTACATCCGACTCAAGacaggagaggaagaagaagaagaggaagaagaagaggaagaagaaggagaagaagaaggagaggaaggagaaaaagaagaaggaggaggagaagaagagggggAAGATCTTAACCTTTCATGGAGCACCGATGGCGCCCCGACTGATTCTCTGTCCGCTGCTGCTGAGgggataaaaagtgataaaacccGCCGCCATTCAAGCGCTGTTCAGCAGGACGCGGAGACGGAGGACGCCGAGGACCGGCTGGACTCTGACGGAGACGAGGCGTTGGACGgagacgacgacgacgacgactgGAAACCCGACAGCGAAGCCGAGCCGCGGACGTCGAAGCCGCCGCTGCCGGCACCGCGCAGGAAGCGCCGGGCCGGCCACCCGTGTGGCGTGGAGGGGAAGCTGATCGAGCGCAAAACGGCGTAAAGTCTGCGGCGTTTGGTACCGGCTGACGGGCAGTCTGATCAAACACGCGTGGAGCCACGCCGAGGACTCTCCCTCGCCGCCGCACGTCTGCGCCGTGTGCGGCGAGAATTTCG

Function

GO:

id name namespace
GO:0005778 peroxisomal membrane cellular_component
GO:0044438 obsolete microbody part cellular_component
GO:0044439 obsolete peroxisomal part cellular_component
GO:0031903 microbody membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199018 lncRNA upstream 289 29872424 ~ 29878580 (+) True G147349
TU199021 lncRNA upstream 855 29876238 ~ 29878014 (+) True G147350
TU199087 lncRNA upstream 15932 29853325 ~ 29862937 (+) True G147381
TU199088 lncRNA upstream 20033 29858082 ~ 29858836 (+) True G147382
TU199058 lncRNA upstream 24114 29803012 ~ 29854755 (+) True G147367
XR_005641553.1 lncRNA downstream 25446 29908841 ~ 29911308 (+) True LOC120572980
TU199094 lncRNA downstream 28898 29912293 ~ 29917860 (+) True G147387
TU199102 lncRNA downstream 39360 29922755 ~ 30001836 (+) False LOC120572948
XR_005641609.1 lncRNA downstream 54673 29938068 ~ 29938474 (+) True LOC120573035
XR_005641582.1 lncRNA downstream 75560 29958955 ~ 29965038 (+) True LOC120573008
XM_039822403.1 mRNA upstream 53437 29823219 ~ 29825432 (+) True LOC120572888
XM_039822180.1 mRNA upstream 139681 29717852 ~ 29739188 (+) True LOC120572760
XM_039821914.1 mRNA upstream 182869 29691329 ~ 29696000 (+) True LOC120572592
XM_039821913.1 mRNA upstream 188024 29675313 ~ 29690845 (+) False clrn1
XM_039822441.1 mRNA upstream 358610 29516852 ~ 29520259 (+) True LOC120572920
XM_039822398.1 mRNA downstream 28027 29911422 ~ 29934098 (+) True LOC120572883
XM_039822281.1 mRNA downstream 55799 29939194 ~ 29953407 (+) False LOC120572819
XM_039822282.1 mRNA downstream 55799 29939194 ~ 29950579 (+) True LOC120572819
XM_039822446.1 mRNA downstream 67754 29951149 ~ 29952925 (+) True LOC120572923
XM_039822482.1 mRNA downstream 118387 30001782 ~ 30002481 (+) True LOC120572948
TU199012 other upstream 17977 29748766 ~ 29860892 (+) False G147348
TU199023 other upstream 81737 29750089 ~ 29797132 (+) True G147352
TU198992 other upstream 183119 29691826 ~ 29695750 (+) False LOC120572592
TU198920 other upstream 198396 29675313 ~ 29680473 (+) True clrn1
TU198923 other upstream 260717 29573427 ~ 29618152 (+) True G147303
TU199068 other downstream 45432 29928827 ~ 29938473 (+) False G147371
TU199070 other downstream 65524 29948919 ~ 30002501 (+) False G147371
TU199111 other downstream 127240 30010635 ~ 30012296 (+) False fer
TU199110 other downstream 152178 30035573 ~ 30043707 (+) False prpf4
TU199109 other downstream 152505 30035900 ~ 30043707 (+) False prpf4

Expression Profile