RNA id: XM_039779494.1


Basic Information

Item Value
RNA id XM_039779494.1
length 1338
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC120545287
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 36223794 ~ 36265675 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcctgccttcagtctgctgGGAGTTATGTGGAGGATTCTCCTGATGGTCAGTCTGCTCTGCTGGAGCGCTGACGGACAAGATGTGAAATGCAGAAATGACAAGGATGAACCAGTGGACTGGTACATCATCTACAAGGCACCCGGACTGCAAGAGATCAACACTGAGGGTTtggaatatatttacattgatCCAGCCGGGAAGAAGACCTCTAAAGATCACAATAAGCACATCGACGATCCTAAAGGTGTCCTGGCAAACACCCTGAAGCCcatttttaaactaaaaacaGCATTGCCCAAAGACTTTGGATTCATCACCTACAGCGACCAACCTCCTCCAGATGAAAAGGGTGTAACGCCTTCTGTTGGCTCTACGTTTGGTCACAGTAAAGGAGTTGTGATGATGGATAAAACCACAGGAGACAAGACAGGAGTCTGGCTCTCACACAGCGTACCAAAGTTCCCTTTCAAAAGAGATCAAAATTTCTGGCCACCCAGCGGAGCAAAGAATGCTCAGACGTTTATCTGTGTAACATTCAAGTACGAGGAGTTCAAAAAGATAGGTCAACACCTGCTGAACATCAGAGCTTTCCCGTTTGGAAGTCAAATTCCAGCTGGCTTCCATCCTGAGCTTATAAAGGCTAAAGACAAGGAAAACCCAACAGGAGAGAAAATCCAGGAGCTGAAATCAGCAGGAGGAACAGACTTTCGTAGCATTGCTAAAGAACAGTATAAAGGACTTAACGATAGAGGCGACACACTTATAGACCAAAACAGATTTGTTGGAGATCTTTACCTCACTATTGCAGAGAAATACAACACTGATGTGAGGGTCCAGACCTGGGGCCAACAGTGTTACCGTGAAGGTTCCTACTGCGAACAAAATAAACGTCAAGTGATGAATATTAAATCTGTAAAAGCTGATCTGGGTAACGGGGAGGTTGAGTGGGAGCCTTGTAATGATCATTCCAAGTGGTGTGTAGgtaaagataataataataatttgatcTGTATCGCTGATGTAAACAGAGCAGTCACCCAATATGAAAGGCCGGGGGGGGCACTGTGCTTTATACATAAAGAGGCAAGTGAACTATTTAAAGGTCTTATTGGTGGAACTAAGAATTGCCCAAGTCTAACTGGCTCAAAGCGTCGCCGCTTGTCCTCTAACCCTGGCTCTGCCTGTGTCGATGGCTCTGATTAATGACCGATAGGATAAATACGCCTCTCCTTGCCGTCTACAAGTCCtgaggggtattgcacaaaaccaggatcagggattaagccgggatactcaggttatcctggatgaatttagctttgacttggttgcacaaa

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244465 lncRNA upstream 128058 36126999 ~ 36128999 (+) True G180412
TU244464 lncRNA upstream 130901 36125441 ~ 36126156 (+) True G180411
TU244459 lncRNA upstream 134049 36120659 ~ 36123008 (+) True G180409
TU244454 lncRNA upstream 136620 36119954 ~ 36120437 (+) False G180406
TU244492 lncRNA downstream 9267 36274942 ~ 36311558 (+) False G180422
TU244497 lncRNA downstream 9267 36274942 ~ 36311558 (+) False G180422
XR_005636671.1 lncRNA downstream 29629 36295304 ~ 36296441 (+) True LOC120545346
TU244491 lncRNA downstream 35547 36301222 ~ 36311558 (+) False G180422
TU244498 lncRNA downstream 35547 36301222 ~ 36311558 (+) False G180422
XM_039779577.1 mRNA upstream 20145 36228300 ~ 36236912 (+) True LOC120545323
XM_039779546.1 mRNA upstream 196534 36048606 ~ 36060523 (+) True LOC120545305
XM_039779562.1 mRNA upstream 597230 35645554 ~ 35659827 (+) True LOC120545314
XM_039779483.1 mRNA upstream 678453 35569647 ~ 35578604 (+) True LOC120545281
XM_039779565.1 mRNA upstream 763830 35488817 ~ 35493227 (+) True LOC120545316
XM_039779090.1 mRNA downstream 54660 36320335 ~ 36323218 (+) False LOC120545105
XM_039779463.1 mRNA downstream 97327 36363002 ~ 36381752 (+) True LOC120545268
XM_039779462.1 mRNA downstream 97327 36363002 ~ 36381752 (+) False LOC120545268
XM_039779568.1 mRNA downstream 118338 36384013 ~ 36457532 (+) True capslb
XM_039779570.1 mRNA downstream 118338 36384013 ~ 36457532 (+) False capslb
TU244470 other upstream 79135 36176963 ~ 36177922 (+) True G180414
TU244471 other upstream 79135 36177340 ~ 36177922 (+) False G180414
TU244462 other upstream 80686 36123080 ~ 36176371 (+) True G180410
TU244460 other upstream 131672 36123080 ~ 36125385 (+) False G180410
TU244438 other upstream 198321 36058306 ~ 36058736 (+) False LOC120545305
TU244513 other downstream 54692 36320367 ~ 36323293 (+) True LOC120545105
TU244514 other downstream 55635 36321310 ~ 36327396 (+) False LOC120545105
TU244695 other downstream 838572 37104247 ~ 37109021 (+) False LOC120545327
XR_005636811.1 other downstream 996826 37262501 ~ 37262566 (+) True LOC120546136
XR_005636813.1 other downstream 998014 37263689 ~ 37263753 (+) True LOC120546138

Expression Profile