RNA id: TCONS_00070842


Basic Information

Item Value
RNA id TCONS_00070842
length 2743
RNA type mRNA
GC content 0.47
exon number 15
gene id XLOC_036241
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 11234168 ~ 11324143 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGACTTCTGTCGCCTTCATTAACCATTCCACAAAGTAGAGAGGGACACTGAGTACACTTACCTCTAGTGTGCGAAACATTACAGCCTCTCGGAATATCAGAGTACACCCaaatctctccctctctctcaggaAGCAATACAGACCTGCATCCCAGAGGACAGGAGGAACATCATCATTGTGAGCTCCACTTGTGCTTTCTGGTCCACATGACTGCGCAATGCAGCAGCGCTGAACCAAACACCAACACCTGTGCTCTTGGTTAAATCAAGATGTCATCAGCCAATGCCAATGGAGTCGGGAGCTCTGGAAATAACCGTAgagaaaaaacatacaaaaagACTACTTCATCTGCTCTAAAAGGAGCCATCCAGCTCGGCATCGGCTACACCGTAGGGAATCTGACCTCAAAACCTGACCGAGATGTGCTCATGCAGGACTTCTACGTGGTGGAGAGTGTGTTTTTACCCAGTGAAGGAAGCAACCTGACACCAGCACACCATTATCCAGACTTCCGGTTCAAGACTTATGCGCCACTGGCTTTCCGCTACTTCCGGGAGCTGTTCGGGATCAAGCCGGATGATTATTTGTACTCCATTTGTAAAGAGCCCCTGATTGAGCTGTCTAATCCGGGCGCCAGCGGCTCGCTCTTCTACCTGACCAGCGACGATGAGTTCATCATCAAGACTGTCCAGCACAAGGAGGCCGAGTTCCTGCAGAAACTGCTCCCTGGATACTACATGAACCTCAACCAGAACCCCAGGACGCTCCTACCCAAGTTTTACGGCCTGTACTGTGTTCAGTCTGGAGGAATCAACATCCGTCTCGTGGTTATGAACAACGTCCTGCCGCGATCAGTGAAGATGCACTACAAATATGACCTCAAGGGCTCCACATACAAGAGACGGGCGTCACGAAAAGAGCGGGAAAAGCCCTGTCCCACATATAAGGACCTAGACTTTGTGGACATGCATGATGGCTTGTACTTTGACCCAGAGACATATAATGCCCTGATGAAGACACTACAACGGGACTGTCGGGTGCTGGAGAGTTTTAAGATCATGGACTACAGTCTCCTGCTGGGGGTTCATGTTCTGGATCAGAGTCACAGAGATGGAGACGGCAGTGCTGTGGACGGGAAGAGAACTGTGGGACAGAAGGTGCTTTACTCCACCGCCATGGAGTCCATTCAGGGAGACGGAAAAGCAGCAGAGGCTTTGACCACAGACGACACaatgGGAGGCATTCCTGCAAAAACACACAGGGATGAGAAAGTACTTATTTTCCTAGGCATTATCGACATCTTGCAGTCTTATAGATTCATCAAGAAGCTGGAGCACTCCTGGAAGGCGCTGGTCTATGATGGCGATACTGTGTCTGTGCACAGGCCGAGTTTCTATGCAAACAGATTTCTCAAGTTCATGAGCAGCCGAGTGTTCAGAAAGAATCAGCCAAATCGCTTCTCCCCGAGCAAGAAGGCGAGAAACTCCATATCGGCCCTGAAATGCTCTTCCCAAGAGGTGCTGTCCTCACAGAAAGAGGAGAAGACCGAGGAGAAGGCCGACAGACTTGGAGGAGCACGCAGTCTGGCCAGTCTGGATGGACAAGTGCTCTGGTCCTATAACCGTCCTGACCTGGTCCTTCAGACTCCTCACCCGTACGAAGCCTCTTCCTTCAGTCACACCCTCTCCCCGCCCTCTGTTTTCATCAAAGATCATTATCTGGAAGCCAAATCTAATGAAAGATGCGCCTGCTCGACTTTTACACTGGAGGACAGCGCCATCTGTCTGACATCCGAGCAGAGCACCATGGACATCGACAGAGATGACGACTCCGTGCTCGACGTCTACTTTTGAGAAGCACAATGGGATGATGGTTCATCTCTTGCTCTCCATCTCCTGCTTCAGTAGTGGTCTGATACCCATGTGTGGAGAGCTCCTCCTGCTGCCAAACACACCAAACAACAAACACATCTGCCAAAACCACAgctgcaaacacacaaacatctcaTCGCAATCCCAAGCACATTTCCCTGAAGCGTTCAAAAACGACTGCGGATTGATGGAACCAAACGCTGACTGTGCTTTTCTGTAGCAGCAGATGAACCCTAAATATAAAGGCAGCTCTGGGATCAGACTGAAGACTCTTTTTGTTTCAGAGAAAGGCAATAAGTTTGTTCCTCTGAAATACAAATGATGGTTTCTAACAGCTTATCCTCTAGTTTTAGTGACCTCGATGCAAAGCTTGGCGGCAAAGCAGATTTTTAAACGTGCAATTTTCATACATCgtgcaaaagtgtgtgtgtttatgatagTTCTCCTCACTGGAgtgataatcattttattttttaaaggaaaacacACATGGATGTGTGATTTACGAGCACAGAAGTGTCATGTACTGTAAATGTAGGATTTCTGCCAGTTTATCATCAGCTCCTGATAATCAAGAGTGAGACTGGCATCAGCAGTGCGTCATTTACAAAATATCCAGATGCCAGAATGTTTTTAATGTGCTAAAACGCTGATATTTTACATGGGTTTGGCGGAGTTTCGTACAGTTTCTCTCTCAGGAGATATTTTCCTAGAGGCGTCCAGATGATCGCTTGATGTTAGATGATATATTTAGTGCGCTTCTGATTTTAAATGCCATGTcttttgaattttattattattatggtttgtTATTATtgcacatttgtttgttttgaggccataatttattaaatcattattataaatgaa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0046488 phosphatidylinositol metabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0016307 phosphatidylinositol phosphate kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-141 Predicted to enable ATP binding activity and phosphatidylinositol phosphate kinase activity. Predicted to act upstream of or within phosphatidylinositol metabolic process and phosphorylation. Is expressed in blood island. Orthologous to human PIP5K1B (phosphatidylinositol-4-phosphate 5-kinase type 1 beta).

Ensembl:

ensembl_id ENSDART00000008215

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070839 lncRNA downstream 34192 11199033 ~ 11199976 (-) True XLOC_036239
TCONS_00072008 lncRNA downstream 156938 11067166 ~ 11077230 (-) True XLOC_036234
TCONS_00072402 lncRNA downstream 167597 11057877 ~ 11066571 (-) False XLOC_036234
TCONS_00070821 lncRNA downstream 310140 10915833 ~ 10924028 (-) True XLOC_036230
TCONS_00070818 lncRNA downstream 907112 10323325 ~ 10327056 (-) True XLOC_036228
TCONS_00070845 lncRNA upstream 223692 11547835 ~ 11550273 (-) False XLOC_036242
TCONS_00070858 lncRNA upstream 630973 11955116 ~ 11985309 (-) True XLOC_036246
TCONS_00072403 lncRNA upstream 705330 12029473 ~ 12125374 (-) True XLOC_036247
TCONS_00070863 lncRNA upstream 1018295 12342438 ~ 12364741 (-) True XLOC_036249
TCONS_00072009 lncRNA upstream 1127308 12451451 ~ 12669113 (-) False XLOC_036251
TCONS_00070840 mRNA downstream 4645 11204059 ~ 11229523 (-) False XLOC_036240
TCONS_00070837 mRNA downstream 31668 11173794 ~ 11202500 (-) False XLOC_036239
TCONS_00070838 mRNA downstream 31790 11173823 ~ 11202378 (-) False XLOC_036239
TCONS_00070836 mRNA downstream 64054 11151805 ~ 11170114 (-) True XLOC_036238
TCONS_00070835 mRNA downstream 84851 11136825 ~ 11149317 (-) True XLOC_036237
TCONS_00070843 mRNA upstream 218709 11542852 ~ 11546175 (-) False XLOC_036242
TCONS_00070847 mRNA upstream 254175 11578318 ~ 11640240 (-) True XLOC_036243
TCONS_00070848 mRNA upstream 422340 11746483 ~ 11770092 (-) True XLOC_036244
TCONS_00070849 mRNA upstream 455404 11779547 ~ 11832773 (-) False XLOC_036245
TCONS_00070851 mRNA upstream 455570 11779713 ~ 11832771 (-) False XLOC_036245
TCONS_00070841 other downstream 4661 11226290 ~ 11229507 (-) True XLOC_036240
TCONS_00070819 other downstream 794324 10439725 ~ 10439844 (-) True XLOC_036229
TCONS_00070817 other downstream 1182035 10052019 ~ 10052133 (-) True XLOC_036227
TCONS_00070809 other downstream 2642380 8591671 ~ 8591788 (-) True XLOC_036217
TCONS_00070808 other downstream 2713995 8520042 ~ 8520173 (-) True XLOC_036216
TCONS_00070844 other upstream 218761 11542904 ~ 11550272 (-) False XLOC_036242
TCONS_00070846 other upstream 224276 11548419 ~ 11548519 (-) True XLOC_036242
TCONS_00070861 other upstream 858976 12183119 ~ 12209360 (-) True XLOC_036248
TCONS_00070868 other upstream 1127943 12452086 ~ 12604702 (-) False XLOC_036251
TCONS_00070869 other upstream 1141156 12465299 ~ 12668565 (-) False XLOC_036251

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_07548433_07582538.mRNA True 1941 mRNA 0.49 15 CI01000010 7548433 ~ 7582538 (+)