RNA id: TCONS_00072011


Basic Information

Item Value
RNA id TCONS_00072011
length 679
lncRNA type read_through
GC content 0.37
exon number 2
gene id XLOC_036277
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13714942 ~ 13716577 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGGGGCCCGATGGTTCTAGAGCCAATCAGCTGCTGAACATATTTATATGATAAGAAAGAAGCCTGCTACAAGAGAGACAGTGGAAGGGAGCCTCCAAGACATTTTTATTAGGATCTGCTAATCATGAGGGGGCAGACAAAAGAAAttgcattttccttcagcttaatatcaggggttgccacagcggaagaaTCTGGATAttactttggcatatgttttacacagcaaatggcctcccagctgcaacccagcactgtgaaacacccatacactcttgcattcacagacACTTCTACACAATGTTCAAATTCACCTAaagtatagcgcatgtgtttggactgaggtgGAGACCCAcaccaaaacagggagaacatgcaaactccacacagtaatgccaactgacccagcctggacttgaaccaccaacctttttgctgtgaggtgacaggctgagccactgtgctgccccagtGTAGTTGTTAATAACTTCCAGATATTTTACAGTttgattttgtaataataatgtatgtttacatttattgtaatatgttaatatttattcacAATGTAATTACTTTGTTATATTAAcgttaaatgttatattaatgttataatatattataataaataattataataatgttaaattataaataatacaataatttttataatg

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070904 lncRNA downstream 36527 13666427 ~ 13678415 (-) False XLOC_036276
TCONS_00072406 lncRNA downstream 408894 13302679 ~ 13306048 (-) True XLOC_036263
TCONS_00072405 lncRNA downstream 867456 12845269 ~ 12847486 (-) True XLOC_036254
TCONS_00072404 lncRNA downstream 1004718 12686691 ~ 12710224 (-) True XLOC_036253
TCONS_00072010 lncRNA downstream 1045530 12452086 ~ 12669412 (-) False XLOC_036251
TCONS_00070911 lncRNA upstream 254313 13970890 ~ 13972558 (-) True XLOC_036280
TCONS_00070916 lncRNA upstream 313344 14029921 ~ 14043884 (-) False XLOC_036283
TCONS_00070929 lncRNA upstream 455499 14172076 ~ 14179774 (-) False XLOC_036290
TCONS_00070937 lncRNA upstream 722213 14438790 ~ 14452438 (-) True XLOC_036294
TCONS_00072012 lncRNA upstream 758192 14474769 ~ 14482295 (-) False XLOC_036296
TCONS_00070903 mRNA downstream 36527 13653699 ~ 13678415 (-) False XLOC_036276
TCONS_00070905 mRNA downstream 36527 13672285 ~ 13678415 (-) True XLOC_036276
TCONS_00070901 mRNA downstream 73920 13630492 ~ 13641022 (-) True XLOC_036274
TCONS_00070900 mRNA downstream 114668 13597405 ~ 13600274 (-) True XLOC_036273
TCONS_00070899 mRNA downstream 140178 13572531 ~ 13574764 (-) True XLOC_036272
TCONS_00070906 mRNA upstream 6079 13722656 ~ 13735572 (-) True XLOC_036275
TCONS_00070907 mRNA upstream 78208 13794785 ~ 13823091 (-) False XLOC_036278
TCONS_00070908 mRNA upstream 85650 13802227 ~ 13823098 (-) True XLOC_036278
TCONS_00070910 mRNA upstream 244078 13960655 ~ 13972626 (-) False XLOC_036280
TCONS_00070912 mRNA upstream 261909 13978486 ~ 13985032 (-) True XLOC_036281
TCONS_00070885 other downstream 475850 13238973 ~ 13239092 (-) True XLOC_036261
TCONS_00070876 other downstream 702115 12998252 ~ 13012827 (-) False XLOC_036256
TCONS_00070870 other downstream 1045851 12521352 ~ 12669091 (-) True XLOC_036251
TCONS_00070869 other downstream 1046377 12465299 ~ 12668565 (-) False XLOC_036251
TCONS_00070909 other upstream 161151 13877728 ~ 13877845 (-) True XLOC_036279
TCONS_00070922 other upstream 376217 14092794 ~ 14094516 (-) True XLOC_036286
TCONS_00070936 other upstream 697776 14414353 ~ 14451783 (-) False XLOC_036294
TCONS_00070951 other upstream 1575790 15292367 ~ 15305523 (-) True XLOC_036304
TCONS_00070954 other upstream 1916155 15632732 ~ 15632847 (-) True XLOC_036307

Expression Profile

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