RNA id: TCONS_00071088


Basic Information

Item Value
RNA id TCONS_00071088
length 1841
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_036369
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19398335 ~ 19467011 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgtgtgtgcgcgagccTCCGCCGCCGCCGACAGTGGACCGAGCGGGTCACTTCTGACAAGTGAGATGGTGAGAGGGGGGACGGAGTGAGGCCATGGGCTGCACCTCGGCTAAGCAGGTGTCGGCTGTGCCCACCGACGAAGAGGGCCGGGGCAAAGCCTACAGCAACGGTGACCTCTTCACTGATGAATATAAGATGAAGGGGGTGGAGGAGGTGAAGTACATGCGTGGAGAAGAGGACCGAGTAAACGCACGCAACCAGGAGAACCTGGAGAAGAGCTCGACGCAACACAGGACCAAACAGCACAAAGAGGTGCCCGGGCCCAGCGCCAACAAGACCAACATTCATACGTCAGAGAGTCAGCAGGAGTTCTTCAGAATGCTGGATGAGAAGATTGAGAAGGGACGGGACTACTGCtcggaagaggaggaggaggacgatGTGACATAGCAGAGAGGTGCCAGATCTTGCCAGAGATGGAAAAAGAGAGCGAGTGCGACTCAAAAAAATCAGTGTTTCCTATGTCTGTGACACTCTGTCGGTCTGAGAgcgagtgtgcgtgtgtgtgtgagtgcgtgagAGTGTGTGCTTGTGAGAGCGAAAGAGCGCAGGACTTTTCCTCATAGGCTGTTGCACCCTTGACCCCTTCTCCTCTCTCGGGGTTGCCTTGCTTGGAGAATCTAGATGGTTTTGGGTGAAGAAAGAACAGCTTGATTGATGTATTATCAACACAGACTCACTCTGATGTGAAATGAGGACCCGCCGCCCCCCCCCTTCTCCTACAGCCAGCATTGAAACGGCCCCCTTCCTCcgactgagagagagagattatgtCGGGAAAAGCAAGATGAAAGGAAATGGAGAGAAGAAAAGACGACATGCCCCTCCCAGTCCTTGTTTTAAGTGGCAGGCCAGAGAAAAATCTGACATACGGAGGATCGAGAGGAGAGCTTACCACCATCCTCTGGAGAGAGACGGGGAGCGAATGTAAAGATGGAGTGTTGTGGGTATTTGGGGACTGAACAAGAGAGATATTTTATTAAGAGCGACTTTATGTATGAACGAACTGGCtgattattttgatattttgataAAGAGCGACGTGGCAAGTTTTTGAACATTTGATCTGGACTCCTGCTTTTTGAaggaccttttttattttattttgtcaagaTTGATTTAATTGTTCCATAAATGTGTTGCTTTTTTGCCTAGATCAGACCTCCTCAAGCTTGTGCTGTAAAGGTCAGGGCTGTGTGGTGACCCCataacacactcaaacacacgcgCATAGGCCAAATTAATCACCCCACCCTCTTTCCAAACATAGCAGTTCTCACTTTCAATTTGAATATCCTGGTATTATTTGTAAAGTTCTCAGAAAATGGGCGGAAACATGGTCAGACTTGTTACCCACGCACAAACCCAAACATATCCCTAAGCTGCAAGATGGCACAATTTAACTTAAAGATCTGTATCAACTGTTGAAGCTGCTCTTAATATAGTTTATTGATGGTGAAGAAAGAAAACTGGGATTGTTTGAGGTTTTCAGTGTGTTAATTTATGTCTGAGAGCCAGGTTTGACCATGTTAATCGTTGTCAGAGGAATGAAGTGTTTGCTGTAGGCCTGTTTATGTTTAGCTACAACACTTCTCGTTCAGTTGAGTCTGCTATAATGTAATCTTCAAATTCAGACATCACTACACTGGTCTGAGGTGGGATTGGGTCACTTTGGAGACAGCGCTGATCGAGCATTTGTAATTATGATTAGTGGATTAAAtcctttttaatgtttattttcgatatgttttctttttctattaaaatataaGACACGGGG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040912-161 Orthologous to human C1orf21 (chromosome 1 open reading frame 21).

Ensembl:

ensembl_id ENSDART00000162010

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071073 lncRNA downstream 184448 19214207 ~ 19216638 (-) False XLOC_036363
TCONS_00072023 lncRNA downstream 628077 18771607 ~ 18773009 (-) False XLOC_036359
TCONS_00072022 lncRNA downstream 628077 18771607 ~ 18773009 (-) True XLOC_036359
TCONS_00072437 lncRNA downstream 801730 18594067 ~ 18599356 (-) True XLOC_036356
TCONS_00071061 lncRNA downstream 868669 18524042 ~ 18532417 (-) False XLOC_036353
TCONS_00072024 lncRNA upstream 6821 19473832 ~ 19477990 (-) True XLOC_036370
TCONS_00072025 lncRNA upstream 518831 19985842 ~ 19989009 (-) False XLOC_036374
TCONS_00072026 lncRNA upstream 518832 19985843 ~ 19988969 (-) False XLOC_036374
TCONS_00072027 lncRNA upstream 519735 19986746 ~ 19988352 (-) False XLOC_036374
TCONS_00072028 lncRNA upstream 519735 19986746 ~ 19988666 (-) False XLOC_036374
TCONS_00071086 mRNA downstream 5976 19364568 ~ 19395110 (-) True XLOC_036368
TCONS_00071083 mRNA downstream 58975 19283143 ~ 19342111 (-) False XLOC_036367
TCONS_00071082 mRNA downstream 87576 19283143 ~ 19313510 (-) False XLOC_036367
TCONS_00071085 mRNA downstream 87576 19300189 ~ 19313510 (-) True XLOC_036367
TCONS_00071081 mRNA downstream 120230 19270861 ~ 19280856 (-) True XLOC_036366
TCONS_00071089 mRNA upstream 2667 19469678 ~ 19487327 (-) False XLOC_036370
TCONS_00071090 mRNA upstream 175188 19642199 ~ 19649617 (-) True XLOC_036371
TCONS_00071091 mRNA upstream 334854 19801865 ~ 19904124 (-) True XLOC_036372
TCONS_00071092 mRNA upstream 481595 19948606 ~ 19975087 (-) False XLOC_036373
TCONS_00071093 mRNA upstream 481595 19948606 ~ 19977088 (-) True XLOC_036373
TCONS_00071084 other downstream 87671 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071076 other downstream 184429 19214829 ~ 19216657 (-) True XLOC_036363
TCONS_00071074 other downstream 185402 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071065 other downstream 816279 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071060 other downstream 863220 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071104 other upstream 947835 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071106 other upstream 1365573 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071108 other upstream 1375123 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071115 other upstream 1473448 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071158 other upstream 2817283 22284294 ~ 22287211 (-) False XLOC_036407

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000010_03142808_03164874.mRNA True 3024 mRNA 0.42 4 CI01000010 3140644 ~ 3165257 (+)