RNA id: TCONS_00073805


Basic Information

Item Value
RNA id TCONS_00073805
length 1309
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_037570
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 1981882 ~ 1986014 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCGTTCCTGCGAGCTCGTCAGAAATGTGCGAGCACAATCTCCTAAGTTCTGGCTATGTCGCTCCCCTTTTGAATTTCCACTCGCCAGACTCCTTGTACCTCCAAAACTTGCGAGGCAATGGAGTGCATCTCTCCGGGCTCCCGCAGATGTCCTACAGTAGAAGAGAGGTGTGCTCGCTCCCGTGGAGTTCTTCAAATTCGTGCACTGCTCCGGCCCAGAGCCGCGCCTACAGTGGCTACTCTCAGCCGTTTTTCAGCAATTCAGCCGCTGTGAGCGCTAGCCTCAACACCCACAAAAAGGGCTCACTGGAGGAATCCGGGAGGTACTACTTCCAAGATGTCAGCCACAAATCAGAGGAGCCAGGTCGACCTAATGCAGCTTACGCAAGTGAGCAGAGCTCTGCCAGCAATGGACTTTCAAACCTGGAAAGGCGACAGCTGAACGCAGTTGCACCCAATGAACTGAGCTGCATTGAACAGCCAGAGAGCGATGCTTCAAAGCAGTCTGTCAGCTCCATCGCTCCATTCCAGCCGTCACTGAGCGCCCAGAATATCAGACCAGCTTTCACCGATGGTACGCTCAACTTCTCCAATGACCCTTCCGCCATAGACACCAATGGACTGCCGTGGTGTCCCTCACAGGTGAGGtcaagaaaaaagagaaaacctTACACGAAGCCCCAGCTAACCGAACTGGAGAACGAATTTATGATGAACGAGTTTATAAACCGACAGAAACGGAAGGAGCTTTCGGACAGATTGGAACTGAGTGATCAGCAAGTCAAAATCTGGTTTCAGAATCGCAGGATGAAGAAAAAGAGACTCATGATGCGCGAGCATACCTTCACTATATACTAAGATTTTTTGTTGTAATTGGATTTATTAGGGGATCCTTCATACAAGTGACTTTTCTTTTACGCTGATAAAAATACATCTATTTAACTGGAAATTAAAATTTACCACAAAccaattaaaagtaatttaatattcaatcggaatattttgagtttttatttatttagtatcgCTGCATGTGTATGTGTCTGGTGGTGTGAATCGAGAATCTGAATGATGTATATATCCGAATAAAGTGAGCTTTATGGTTAGGAACCACAGCAAATTTAGGCTCGTGTATGTTGGATTAAAAACATACATTCTGGCCCCATTAAAACTACACTGGGCAGCTAATATAGCTAACTGGCTCATTAAATATTCAGATGTTCCATAACATACCTTTGTGTTAAAAACCTAATTTGTATCTTGCACACTGAatacgttttgttttgttttttcttaaccaaaagtgtaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990415-118 Predicted to enable sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including mesenchyme; pectoral fin; pectoral fin bud; pectoral fin field; and tail bud. Human ortholog(s) of this gene implicated in clubfoot. Orthologous to human HOXD12 (homeobox D12).

Ensembl:

ensembl_id ENSDART00000082339

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075276 lncRNA downstream 45713 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075275 lncRNA downstream 45713 1931428 ~ 1936169 (-) False XLOC_037564
TCONS_00075274 lncRNA downstream 46035 1931428 ~ 1935847 (-) False XLOC_037564
TCONS_00075273 lncRNA downstream 48010 1931428 ~ 1933872 (-) False XLOC_037564
TCONS_00073787 lncRNA downstream 332138 1642605 ~ 1649744 (-) False XLOC_037561
TCONS_00075277 lncRNA upstream 166318 2150922 ~ 2171296 (-) False XLOC_037572
TCONS_00075278 lncRNA upstream 166318 2150922 ~ 2173197 (-) True XLOC_037572
TCONS_00074958 lncRNA upstream 195915 2180519 ~ 2207258 (-) True XLOC_037573
TCONS_00075279 lncRNA upstream 251289 2235893 ~ 2277636 (-) True XLOC_037574
TCONS_00074959 lncRNA upstream 397737 2382341 ~ 2389808 (-) True XLOC_037576
TCONS_00073804 mRNA downstream 3792 1975818 ~ 1978090 (-) True XLOC_037569
TCONS_00073803 mRNA downstream 11811 1967707 ~ 1970071 (-) True XLOC_037568
TCONS_00073802 mRNA downstream 16155 1964005 ~ 1965727 (-) True XLOC_037567
TCONS_00073796 mRNA downstream 21965 1937052 ~ 1959917 (-) False XLOC_037565
TCONS_00073807 mRNA upstream 2212 1986816 ~ 1990323 (-) True XLOC_037571
TCONS_00073810 mRNA upstream 575615 2560219 ~ 2573121 (-) False XLOC_037578
TCONS_00073811 mRNA upstream 575936 2560540 ~ 2572831 (-) False XLOC_037578
TCONS_00073812 mRNA upstream 582579 2567183 ~ 2572790 (-) False XLOC_037578
TCONS_00073814 mRNA upstream 607364 2591968 ~ 2594410 (-) False XLOC_037579
TCONS_00073798 other downstream 22330 1938985 ~ 1959552 (-) False XLOC_037565
TCONS_00073801 other downstream 25959 1953021 ~ 1955923 (-) True XLOC_037566
TCONS_00073800 other downstream 28849 1952956 ~ 1953033 (-) False XLOC_037566
TCONS_00073794 other downstream 47796 1931440 ~ 1934086 (-) True XLOC_037564
TCONS_00073793 other downstream 232846 1748919 ~ 1749036 (-) True XLOC_037563
TCONS_00073808 other upstream 241859 2226463 ~ 2277492 (-) False XLOC_037574
TCONS_00073809 other upstream 346257 2330861 ~ 2337303 (-) True XLOC_037575
TCONS_00073827 other upstream 1506227 3490831 ~ 3496579 (-) True XLOC_037591
TCONS_00073830 other upstream 1523714 3508318 ~ 3519711 (-) True XLOC_037592
TCONS_00073841 other upstream 2459314 4443918 ~ 4447104 (-) True XLOC_037598

Expression Profile

//