RNA id: TCONS_00073990


Basic Information

Item Value
RNA id TCONS_00073990
length 1827
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_037681
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 12468500 ~ 12575776 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAGGGCCGAGGTGGAGATCATGAAGAAGCTGAGGGAAGCCTACGAAAACGACGTTGCTGCTATTAACCAACAATCCAACCTTATCCCTGGGTTGAGCCTGAGCGCCCTGGGCATCTTTTCAACCGGTCTGTCAGTGTTGCCACCAGCTGCTGGACCCAGAGGCATCCCACCCGTACCCCCAACCGGCTACAACCCTTTTCTTGGTCACTCATCACAGCTGGGTGGTCTGTACGGCGTCCCACCTGCCAGTGGCATCTCTCACCAGCACACAGCTCCTGAACAGGAGGTGGTCTACCTCTTTATTCCAACTCAGGCTGTTGGTGCTATTATTGGCAAGAAGGGCCAACATATAAAACAACTGGCGCGATTTGCAGGAGCCTCTATTAAGATCGCTCCCGCAGAGAGTCCTGATGTCACTCAGAGGATGGTCATCATCACTGGCCCACCAGAAGCTCAGTTTAAGGCGCAGGGCAGGATATTTGGAAAACTGAAAGAGGAGAACTTCTTTACTGCAAAAGAAGAAGTAAAGCTGGAGACGCATATAAAAGTGCCATCTTCAGCAGCTGGGAGGGTTATAGGGAAAGGAGGGAAAACGGTGAACGAGCTGCAGAACTTAACCAGTGCAGAGGTCATAGTGCCACGGGACCAAACCCCAGACGAGAACGATGAAGTGTTTGTCAAAATCAGTGGACATTTCTTTGCCAGCCAGACTGCACAGAGGAAAATCAGGGAGATCATCCAGCAGGTGAAACAACAGGAGCAGAAGCACCAGCAAGGCGCACCCACAACACCCCGCTCCAAGTGACCATCAGGGCAGCCCCAGCGGGCACCTGCCAATGAATGTAGCCCTCCCAACTGGAACCAGACCAGACCGGGCACAGGGGACCGGCCGGGCAGACCAGCAGCCGTGGGATCAAAACCAAAGAACTTCTTTCTAGGGGAGATGAAGGAGCCACAGGCCGAAGGGCTCTGAATGCACTGCCAGCTTGGGGAGGGAGGGACGGGGAGAGGGAACGCCAGGAAGACAATTGTTCAAAAACAACCCTGAGTATGAGAAGAACAGGTAATGGGGGAAATCACGCTCACCCCATTTAACAATTTTCTTTATAACCTCCTTAATTTAGGCTTAATCTAGGGTTAACACAGATGAGAAGCTCCATTAACACATGTACACTGATGCATTTTGACTGAGTTGTGTTGCTGTTTTCTTGGGTAGGTAAAGTGGGTGTGCACTAGCAGATGGTAAccgattttagtttttttcagatTGCTATTTCAATGATCCTCAGCAGTATTCAATACACTAGAACAAAATACTGTTTTACGAAGCGGGAGTTCGGTTCTGGCACAAGCCATCGAGCGTGTAGTGCACATATTTTCAATTTCTTTTGACGATGGGACGTGAACGTTGGGAAATGTTAATGAAGAACGTTTACTCTTATCTTAGTCTGCATTTCAGGATACATATAGCGCCACAGATTTTTGTTACTTAGGCCTGTGCGTGGCGTCGGATGCCGTTGAAACATTTCTTACTTTCGTTTTTTTAGCTTTTATCGTTTGTACTTCTATTCAGCTCTTACACTCCCTTTTCATTTTCGTTTTTTACACCAGTGTTTTTTGCAGTTGGTAAATTTTACCTCTGCCATGTTATCATGGCGAAAGTCATTGCGAGACGGGCTTGGTATGTAGTAGTTTTGAATTCAAAAGTCACCACCCCCTTGTTTGTTTTAGGGGGTATGAAAACAATGTAAAGCAAAGCAAGCACCAGCGTCTGAAAGACAGTGCACCTTTACTGGCTTGGGCAGAAGCGAAATGGAATGTGCATC

Function

GO:

id name namespace
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007399 nervous system development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-44 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in nervous system development; regulation of RNA metabolic process; and regulation of gene expression. Predicted to act upstream of or within mRNA transport. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human IGF2BP2 (insulin like growth factor 2 mRNA binding protein 2).

Ensembl:

ensembl_id ENSDART00000180832

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075305 lncRNA downstream 66702 12352152 ~ 12401798 (-) True XLOC_037678
TCONS_00075304 lncRNA downstream 296715 12163937 ~ 12171785 (-) True XLOC_037677
TCONS_00075303 lncRNA downstream 296718 12076843 ~ 12171782 (-) False XLOC_037677
TCONS_00075302 lncRNA downstream 296725 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00074001 lncRNA upstream 96328 12589956 ~ 12594777 (-) True XLOC_037682
TCONS_00074006 lncRNA upstream 161677 12655305 ~ 12656425 (-) True XLOC_037685
TCONS_00074010 lncRNA upstream 233558 12727186 ~ 12736053 (-) False XLOC_037686
TCONS_00075306 lncRNA upstream 396270 12889898 ~ 12902782 (-) False XLOC_037688
TCONS_00075307 lncRNA upstream 405540 12899168 ~ 12903013 (-) True XLOC_037688
TCONS_00073989 mRNA downstream 24774 12428226 ~ 12443726 (-) True XLOC_037680
TCONS_00073987 mRNA downstream 43706 12405121 ~ 12424794 (-) False XLOC_037679
TCONS_00073988 mRNA downstream 43709 12405646 ~ 12424791 (-) True XLOC_037679
TCONS_00073986 mRNA downstream 44269 12403289 ~ 12424231 (-) False XLOC_037679
TCONS_00073983 mRNA downstream 198520 12262702 ~ 12269980 (-) False XLOC_037678
TCONS_00073996 mRNA upstream 85449 12579077 ~ 12594759 (-) False XLOC_037682
TCONS_00073997 mRNA upstream 85783 12579411 ~ 12595003 (-) False XLOC_037682
TCONS_00074002 mRNA upstream 102410 12596038 ~ 12625385 (-) False XLOC_037683
TCONS_00074003 mRNA upstream 104453 12598081 ~ 12624622 (-) True XLOC_037683
TCONS_00074004 mRNA upstream 155077 12648705 ~ 12652984 (-) True XLOC_037684
TCONS_00073978 other downstream 613195 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073973 other downstream 896445 11571973 ~ 11572055 (-) True XLOC_037671
TCONS_00073967 other downstream 916796 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 918103 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 1621951 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073998 other upstream 88638 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 91015 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074000 other upstream 91275 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00074018 other upstream 392124 12885752 ~ 12887858 (-) True XLOC_037687
TCONS_00074026 other upstream 1346114 13839742 ~ 13853399 (-) True XLOC_037696

Expression Profile

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