RNA id: XM_026947492.2


Basic Information

Item Value
RNA id XM_026947492.2
length 5479
RNA type mRNA
GC content 0.51
exon number 33
gene id cfap65
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 20937992 ~ 20960443 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATCGCAATTTATCGCGAGaacGTGTTGCAATGCTGGCTAATATTTCGAGGAGCCCTCTGAACACTGGGATTCCATGGGAAAACAGACATGGCATGCAGGGAACGGTTTCTGGTCTGCGACGATCCAGGGGGTCTCCGAAAAAAGCATCCAGACCCAGCTGTTTCTTAGGAGTGGAGACCTTGGCTGAGCTAGTCTGGGAGGGCTGGGAGCTTGGAAGACAATATACCAAGTCACTTATTCTGAaaaatgtgcatgaaaaacttCAGAAACTCAGTTTCAGACCTCCTGTGTCCAAAGTCTTTACCACACTTTTTCCTCAGACCATCATTCTTAGTCCTGGGACGTCTTTTTCTCTGCCAATCACTTTCCATCCCCTTAAGGAGGGTGAGCATGTGGACAGTATTGAGTTCCGGTGTAAGGAGGGGACATTTCTAGTGAAACTGCGTGCAGTGATGCTACATCATGCATTGGAGCTTCCTGATTCAGTGCAGCTTCCATCGTGTGCCGTacaacacagcacaaacacCAGCTTCCTCTTCCGCAACACCAGTAAGCTGCAGACCTGTTTCCAGTGGGTGGTGGAGCCACCATTCGAGCTCTCTCCGCTGAGCGGGGTTCTGGAGCCAGGAGAGCAGTGCAGGGTTTCTGTAACTTTCAAACCACAGCAAGCGCTGGTGTACCAGACAGTGGCCTCCTGCACATTcgggaaggaaggagagaacAAATGCACAATGTTACTAAAAGGACTGTccaagTACCCGCACCTACAGATCAGTCCCCTTGGCCAGGAGGAAGGAGGTGGGCTGCTTGAATTTGGCAGTGTAGCAATTGGAAGCTGTTTGGAAAAACACTTTGAGATCCACAATCCTTCTTCAGTGTTGACCTCCTTCTTTCTGACTCGTGTAATAAGGCCGGCGCTTATGgagtctgtgtttgagtgtgATGTGAAGGAAGGGCAGGTGGCTCCATGCTCAGTACTGAGAGTGCCTGTCCGTTTCACCCCACTCACTGTGGACAGCACCAGCGTGGACTACTTCCGCCTCAGCTGCCCTGGGGGAATCAGCACAGATGTGCTCAAAGTCACTGGCTCATGCATAGGTCCAGTAGTTTCTTTAAGCTCCTCTATGGTGGATTTTGGCTGTGTGGAAGAGGGAGAGGAAGCCATGCGTATTATTCACATCATAAACTCCTCTACTGTCCAGGCTCATTATCAGTTTGACATGGACCCCAGCAACCATTGTGTGTTCACACTTGACCAACCAATTGGCACTCTGCCAGCCAAGGGCAGCCTCACTCTGCGTTTAAGGTTCCGCCCCTATCATCCCATTGCCTATCACAAGAGAGCAGCGTGCCTTATACTGCACAGGgAGCCGCTTTTGTTGGACTTGATTGGCACCTGTCACTCAGAACAGCTTAAGCCAGACATCTTACAACCCAGACACCTGCATGTGTACAGACAAAACCTGCTCCGTGGTCTAACCTGCTACCCTCCTGATATACTCAGTGCTATGCTGGCTGATCATAAACTGCAACTGGATGAAAGTGGGGCATTATTATTTCAAAAGGACTCATCAGATGAAACGGCTTTGTCCGAGTCTCCTCTCTCCCTGAGGAGCATGATGGAAGAATATTTCCATATGAACTTGGCAGATAAGGCAGGAGAACATCCTGATGAGAGTGGAGATCCTGAATGTTTCCCCCTGCCCCATGTCACGGTGGAGCCCACTGAACTGCTTTTTTACTCAGGGCCATCATCACAATCAGTCACCATCACCAACCACACCAAAGGCAAACTCAGCCTGCTGTGGACCCCGGCTGCAGACTCGCCCTTCTCCATCACCCCTCTCACCTGTGACCTGAGTCCTTTAAAGTCCACTGTCTTCATAGTGACATACGCACCCAAACAGCACAATGTCTACCATGCAGCACAGCTCGAGTGTTTCACTCTCTACAAGATTTTGAGGGATCATCGGCAGACAGAGGACCGAACTCTGTGTCCTCCGTGGTGTCTCACAGTCAGGGTGACTGCTCACTCATTTCAGCCTGGAAATGAGCACTTCATCCCTTGCTTCTGTCTGCAGCCGACTCAAGTGATGTTTCCAGCTTTGAATCAGGTCTCCTACAAGAGTATTCTCCTGCAGAACACAGGAGACCTTCCTCTTATCTTTAGCTTGACCACAAAGGACTGTCCTGATGTATCTGTGCTGCCCCCTAGTGGCTTAGTACCACCAGGCAGCCACCAGATCCTCATTCTACGATCTACTCCTGCTGCAGAAAACCCTGGCAGTTTACCTCTGACCCTGCAGCTCAACGCCagccccaaacacacacagGATCTAAGCATGGTGTGTCTGGCGGAGAGGCCGCGCATCAATTTGGAGGGTGACGGGAGCTTGTTTTTCAGGCCCACAGCAGTGGGCTCCTGCTCCAAGACAACTCTGAGCATCAGGAACTTTAGCAGAGTAGCGTTACACTTCCACTGGAAGGTCTGTAGCTCAGATCGCAGAGTTCTCTCTGTACAACCAGACTCAGGTGTACTGCAGCCCAATGAATCCCAGGTTCAGACATGGTCCTTCACCCCACTGGAGGAGATGGCATATAATATGAAGGCTAGTCTAATTTTCTGGCCCATTCAGAAACCAGATTGTAAAAGGTCCAGACTCTCTCTTAAAGTTGTGGGACTATCTGCCAAAGGTTCCATACAGGCTGGTCGCTCGTTTCTGGATCTGGGTGAGGTGTTGGTTGGAGGTTGTAAGTCATTTGAGGTTCCTCTGCTGAACACCAGTCCATGTGCTGTTAGCTTTTCTCTGGATGTCCTGCAGAGCATCAGTGCTCTAGGCATTCCTGAGGACTCACTGGAAGACCCTCTCGTTCTGGACATGGAAAGTATGAAAGGCACCATTCCAGCTCAGTGTCAGCTGCTAATTCACTCCACAGTGAGACCGACTCGCAGGGCCCAATATCGCTGGACCATCTGCTATAAGATCCTTAATGCCTCTGGCTTAGTGGTGGGGGAGTCCTGCTCTCTGTGCCAAGTTGAAGCAGAAGGAGTTTATCCCACTCTGGAGGTGACAGATGCCCGTAGCAGTGGCAGTGTGGAGGGTTTAAGTAAGCTGTATCTCTGGGAGCTCTTCTGTCTTGACGCACTAAATACTTACCTGCTCAGTGAGCCAGGTCCACCTGAGCTTACCTACAGAGTGCCCACTAGACACAGTTTTCACCGCTGTCCACCCGTCTTAACCTCAGCCATGTTGGATTTTAACTTCAGCGCTGCGCCTCTGGGTGCAGACCCCTCCAATGTCCTGCTCATGTTTGAAAACACTGGGAATATCCTTGTAGAGTGGTCGTTTCTGTTCCCGGAAGATCAGCAGATTGAGCTGGAGTGCTGGGCAGAGAGTGCAGAGTTAAGCCCCACTGAGCTCCTTCAGATGAAAGTGCAGGATAACAGGATGTTCTCAGTGTCCCCACGCTCTGGCAAACTGCAACCCGGCCAGCGGAGGGCAGTGCAGTTCACATACAGACATGACTTCGCTGGGACGTATCGGCTTCCTGTCCTGCTGAAGCTCTCTCATGGCAGAGAGATTCTGCTGAATTTTATAGGTGTAACTGTTGAGAAGGAGAGACGCTACCTTCACTTCCCCTCCACTCGACATGTTTTTGCTCCTGTGGCTATCGGAGGGTTTCATCCTCCCAAACAGgtgtatgaGCTGTATAATGGAGGGGCTCAGCCATTGAGGTACCGTGTGGACACTTTGCCGCTGCAGGAACTACAGGATGAGAACTTTAATCATCCTGTCTTGCAGTGCCTGAACCCAGAGGGAGACGTGCAGCCTGGATGCACCGCCATGCTGGAGTGGATCTTCTCTCCTCTGGAGGCTAAAACATACAGTGTGGACATCCCTATTTACGTGCTGGAGGGAGACTGTGTGCTGGTGACGTTTGAGGGCTGTGGCTTTGACAATAGAGACTCGGTGCCTCTTCAACTTCATGACGGACATCTCACTGTGCCCTGCACTCAGAAAGTGCCCTTACCCGGACAGATGGTGTTCCTGTCAGAGGAGAGAGTGTCTTTTGGTGACATTCCAGTCTGCTCTCGGAGCACACGTATTCTGTTTCTGACCAATGTCTCTCACACTGAACGAGTCCTCTACTCGTGGAAACTGAAAGGACAAGATGGCAAGCAGGCAGTGCAGATTCATCCAGTTAGTGGATCTCTGGCTGCAGAGGAGAGCATTCTCTGCATCCTCACTATTTACACCTCAAGCAGCCCCACATTCTACCAGCAAGATCTCATCTGTGAAATCACTACAGAGGCAGCTTTCACTTGTTACCAGTTAGACCTACAGCGAtgggaggaggagaaagagagagaaaaacatgaatTCACCATAACGGAGAAAGACCTGATACAGACAAACCCTCAGAATAAACCCACTCAGGGAGGAATAGCAGCCCAAAAGAAATCCTCCACTGAAACCCGGAAATTCAAGGCGCTGCCACCCATCCGCAGTAGCAGTGATGCTGCACTTGGAGAGCCCACTGCCAGGGCAGAGAAGAAAGCTCAGGAGGACGTGGGGAAGAGACAACCAGAGCCACCTCGCCCAAAACTGCTCCACCTGGGTGTCACGGCACGCTCGCACTCCCTGCTAGAGTACCAGGCACAATTCCCTTCTCAGTTCAGCAGGCATCACATCTACAGACCTGTGCCATCAAAACTTCCTCAGTCTGGATCAACTGAGAGTCAGCTCTTTTCAACAAACATGCCTCCTCTGACCCATGGTCCGGAGAGAGACATTCTCACACACCCCCTCACCTCTTTGCTCAGAAGTCTCTTGGATGACCCTGAGTTCCAGCAGGAATTGCGGAACACCTCGACTGAGCCGGTGCCCTACTTCACCCAGCTTCAGCCTGCTTCCCCCATTCTGCCCTCGAGTCCCACTGAGACACCATATACAGAAGACACAGTCTGTTTCACTGACTTGAGACCATCTGCACATCACATGGAGAGTACTGACACTGtggcacacactcacacacagtctgagGGTGAGTGTGAACCACAACCATGTCAGAAGCTGAACCCCAAGCACAGGGAGCAGGTGCAGGAATCCATTCGCAGaAGTGCAGAGTTTGGTGATCTGATTGAGGAGATTCTGCTAAATACTCTGCAAAACCTAATGACGGAGGCTTTTCTGGGGGAGCTGGTTCTGACAGCCAGGCCACGCATCATCGCCCTGCCACCATGCTCAGCCAGGAGAAACTCCAGGAGACAGTCCAGAGGCCATCTGGTGTGTGACAGTGGTACAGCTCGACAGCACACCCTGGGGATCAATCCCTACATGCCTAGCATAGCCCTTCTCTCAAACCTGGAGTCTCAGCACCACTGATTTTCTCCATATAATAACCATTTCAGTCCACTCAACATGACTGCATTTTCTAAATCTCGTCTTTTTTCCTACatcatattctttaataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102408 lncRNA downstream 137442 20800289 ~ 20800550 (-) True G86260
TU102117 lncRNA downstream 428369 20483169 ~ 20509623 (-) True G85978
TU102080 lncRNA downstream 542263 20394471 ~ 20395729 (-) False abcb6b
TU102081 lncRNA downstream 542263 20394824 ~ 20395729 (-) False abcb6b
TU101871 lncRNA downstream 928838 20007273 ~ 20009154 (-) True G85779
XR_003404847.2 lncRNA upstream 5601 20965900 ~ 20976142 (-) False LOC113547596
XR_003404846.2 lncRNA upstream 5601 20965900 ~ 20976142 (-) False LOC113547596
XR_003404838.2 lncRNA upstream 7607 20967906 ~ 20976155 (-) False LOC113547596
XR_003404845.2 lncRNA upstream 7607 20967906 ~ 20976142 (-) False LOC113547596
XR_003404837.2 lncRNA upstream 7607 20967906 ~ 20976142 (-) False LOC113547596
XM_026913223.2 mRNA downstream 418 20933518 ~ 20937574 (-) True LOC113526297
XM_034304794.1 mRNA downstream 647 20933518 ~ 20937345 (-) False LOC113526297
XM_026910709.2 mRNA downstream 29453 20883784 ~ 20908539 (-) True fn1a
XM_026912654.2 mRNA downstream 112619 20552393 ~ 20825373 (-) False pard3bb
XM_026912797.2 mRNA upstream 874 20961173 ~ 20964981 (-) True mnx2a
XM_026911960.2 mRNA upstream 39919 21000218 ~ 21025736 (-) True ptprna
XM_034304548.1 mRNA upstream 42611 21002910 ~ 21025738 (-) False ptprna
XM_026912534.2 mRNA upstream 84126 21044425 ~ 21068353 (-) True tmem198a
XM_034304627.1 mRNA upstream 84126 21044425 ~ 21061922 (-) False tmem198a
TU101958 other downstream 700377 20226728 ~ 20237615 (-) True G85848
TU101560 other downstream 1364529 19568751 ~ 19573463 (-) False steap3
TU101475 other downstream 1450253 19481120 ~ 19487739 (-) True grb14
TU99754 other downstream 3898149 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 4717126 16219964 ~ 16220866 (-) True G83554
XR_004578271.1 other upstream 175747 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 175747 21136046 ~ 21144621 (-) True phgdh
TU102877 other upstream 339588 21299887 ~ 21305100 (-) False dhrs9
TU102903 other upstream 497436 21457735 ~ 21459330 (-) False LOC117597354
TU102904 other upstream 497436 21457735 ~ 21459330 (-) False LOC117597354

Expression Profile