RNA id: XR_003404838.2


Basic Information

Item Value
RNA id XR_003404838.2
length 2074
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id LOC113547596
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 20965900 ~ 20976155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaagacagacacagagctgGCTGATACACTAAATAACATATTCACAGCCGGGTTTTCATATGGAGCCCTGGGGAGCAACTAAGGCACAAAGACTGTGACACGGCCACCAGATTGGCCATGGTGTTCAGCTGTTAGCTGATTACATTGATCTCATTGATTTGTTACAGCTTTCCAGTCATTCCATACCCAAAGGTTTTTGTGTTTCTATGAGCTGTAATATTTCTTCAGAGGTGCTTTTACTTAAAAGGCAAAGAGGAGGAGTGGGGGGTGAGGCAGACTTGTGCACGACCCATCTGCATGCTCTTGCTCTTCAAATGCTCTGCCGAAGGTAGACAAAACGCATGAGTGTATGTTAAAGGCGATTTGAGCTTCATTGTATACAGCCACTGTGGAGACGCTCCTGATTAAAAACCACAAACTCTGTCGGTGGGTGGAGCAGGCCATCACAGAGCAAGATCAGGTGCCATGAGCAGAACAAGCATGGCTAATTGAACTgtcatgcacacatacatatataaaacaagGGAAAATTCCTGAACTGTCTGTGGTTTTCTTGACATAGGACAGTGCCCTGATTAGATATTGGAGCAGTAATCTTATGCATTGGTGTTCTATCGCCTGCCCccaatacatatacacagctacacaaaggacatgacacacacatgttcactgGGGCTGTGATGTGATTTCTGTTCTGCCAATTAAATTTGGCAAGCACAGATGAAAACTCTGGCCATATTTTAGGAAGCTGTCTTATTAGACTTGGTTTCAGACATTGGCGATATCTCATGAGCACTGTAAAATGTCACTCAAGAATAGGGAGGAACATTTTGATTGCACCCAGATCTGATATaggcatgttcttcccatggATATTCTCTTTGTTCGCCCTTTGCTGAAATTCAGCATCTTTTCCATCTGCATATAGATCACAGCCATACCACCCACAATGCTCCAGCACAAACGTCTGAACTGACTGTGAGTTTTCTAAGAGCAACAGATGCTAGCGACAGCTCTCAGTACCTAATTATCCACTCCAGCCTGGCTTTTTATACAGCATGTGCACGTGTGTCTGTTCCACTTTTCTGCTTGAATTTAACTTGTCGACAGGAGGATTTGCCAGTAATTGTCCGGTAACACACCCCTTCAGCCTCCACTATTGTCTTGCCGTCTCTGCACGGTGGCTATCATTAATCAACCCATTGAGGAGCGAGCTGAACTCGCTAACCTGCACCGCCCAACCCTAGTTACAGAGGAAGTTTTCAATTTCCCTGGTAAATCACAAGGACACAAGGGCCTGACAATAGGGCATATATGTAAAgtatgaaaattaaaagaagATATATAAAAGATATAGGTTGTCTAATAGTGGTGGTTGCAGCAGGGAGGtggtcatttttatttccaACAGATCCTGAGGTATACGAATGAAAGGTGTTGCAGTGATACTCGATGGGACAAACAGAGAATTCCAGAGCTGTAGCTCTGGGGCTCAGCAGGGATCAGGGTACGACCTAGTGCAACTGGTGACACGGAGAGGTCAGACAGTCACGCAGGGGGCAGCCTGTCACACTGTGCtacatttgtgtgtgaataGTGGTCCACTGAATACCACTTCTGCAATTTGTTCTGTTCAAATGCTCTTGTTCCCCTCTGCACAGTCACTTATAAGTCTGAACGTGTTTGTAGCACTGCTGTGTACTTGCACTTACACCAAtccttgtgtttattttttacttgtGCTTTTTCTGTTCTTATCTAGAGTTAGTTGGTTGAAAATCATTTCAACAACTGTATATTTGTGATGTATTCTGTCTCGCTGTCTCTAATAGctgatgaataaatgtaacTTTACTTCAGGAAACAGAGACAGACTTCCTTTTTTTCAAGAAGCATCTAAAAATATTACTAAACATGAACCCGACAGGCttatactataaaaataaattctattttCATCAGGGTTGACAAGACTCTGTTTCAGGGCTCAGCAAGACGAAGAGGTTTATTTTCTTCTTGATTTTAAGAGCTTTCCAGGTCTGTATTAGGACAACACAATGCTTGCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102408 lncRNA downstream 167356 20800289 ~ 20800550 (-) True G86260
TU102117 lncRNA downstream 458283 20483169 ~ 20509623 (-) True G85978
TU102080 lncRNA downstream 572177 20394471 ~ 20395729 (-) False abcb6b
TU102081 lncRNA downstream 572177 20394824 ~ 20395729 (-) False abcb6b
TU101871 lncRNA downstream 958752 20007273 ~ 20009154 (-) True G85779
TU102519 lncRNA upstream 51371 21027526 ~ 21027832 (-) True G86350
TU102830 lncRNA upstream 466741 21442896 ~ 21444084 (-) True G86621
XR_004578188.1 lncRNA upstream 481578 21457733 ~ 21459404 (-) True LOC117597354
XR_004578189.1 lncRNA upstream 481578 21457733 ~ 21459082 (-) False LOC117597354
TU102902 lncRNA upstream 481580 21457735 ~ 21459330 (-) False LOC117597354
XM_026912797.2 mRNA downstream 2925 20961173 ~ 20964981 (-) True mnx2a
XM_026947480.2 mRNA downstream 7463 20937992 ~ 20960443 (-) True cfap65
XM_026947492.2 mRNA downstream 7607 20937992 ~ 20960299 (-) False cfap65
XM_026913223.2 mRNA downstream 30332 20933518 ~ 20937574 (-) True LOC113526297
XM_026911960.2 mRNA upstream 24063 21000218 ~ 21025736 (-) True ptprna
XM_034304548.1 mRNA upstream 26755 21002910 ~ 21025738 (-) False ptprna
XM_026912534.2 mRNA upstream 68270 21044425 ~ 21068353 (-) True tmem198a
XM_034304627.1 mRNA upstream 68270 21044425 ~ 21061922 (-) False tmem198a
XM_026946722.2 mRNA upstream 116933 21093088 ~ 21100827 (-) True ihha
TU101958 other downstream 730291 20226728 ~ 20237615 (-) True G85848
TU101560 other downstream 1394443 19568751 ~ 19573463 (-) False steap3
TU101475 other downstream 1480167 19481120 ~ 19487739 (-) True grb14
TU99754 other downstream 3928063 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 4747040 16219964 ~ 16220866 (-) True G83554
XR_004578271.1 other upstream 159891 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 159891 21136046 ~ 21144621 (-) True phgdh
TU102877 other upstream 323732 21299887 ~ 21305100 (-) False dhrs9
TU102903 other upstream 481580 21457735 ~ 21459330 (-) False LOC117597354
TU102904 other upstream 481580 21457735 ~ 21459330 (-) False LOC117597354

Expression Profile