RNA id: TU151657


Basic Information

Item Value
RNA id TU151657
length 1572
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G128372
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 6791529 ~ 6793100 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaatatatgacaAATCAGTTAAGCAATAACAGTTGCATAGCTGAGAAAACGTGTTAATAGTGCAATACAATAAAGGGGGCTAAACATTTGTCCAATTATATACaggtaaataataaagtatatttcttttttttaacactgtaaaaaaagactaataatGTCAAATAAACTCGCAATACTAATATGATACACTCGATTTTAAACTAGCTTAACATTTCCAGTCAAGTGAAACGTGGGCAGATTAAAGATTAGGGCTCGGATACACATTTATATTGAAGCAATCTACTGTATAAGGAAGAAAGTCTTTGGAAGTGATATGACATACCaggatacatttttaaagttcaaAATGTGTACATAAGTATATAAGTGTACAACGGCCAAAGTTTCCTACTGCAAACAGATATGTACACTGACTAGACTTTAAGGGTTTAGTCTTGGACAGGTTTAGTCTTTAGAGGTAACAGCACTAAAAATTTAGTGCGTttgctgttcacacacacattatcagcTAAATCAGACATTTAGTCCATCATTGtagctgaagttttctgtttaaaaatggCTAGATAAGTCACATGctcacattacattttttttgatcagtgtgatttatgaacaataaaaataatgatgggaaaatttatttaacagaaaaccATCCAGGTCTTCAACAGTTAAAAACAGTATGAaatctgtaaacattttatttgtaatattgaacTTTAATATTGACCTGCATAAATAAGTGCTGCACAGGTGAAAATGGaattaatgtactgtacattctCCCATCATTACTGAATGGCAATTTGATTGAAAACAAAAGGGTGATCCCTGGCTTTTTCACAGTACTCTACATAGTGGACAACATGGCTGATTGCAAATTATTCACATTCGCATAGCAGATGAAAATTTACTGACAGATGGCGGAAGAGCGTGTGTCCCCCAGACGCACACACATACTTCTTGTAAACACTCCCTGTtttcatgtagtgtgtgtacatggcAACGGAACCTGTGCTCCATTCTGAAGAGATGAGCCCAATGCATGGCAAGTCCATTCACGGGAACCATTTGTCTGTTCTTGCCAAACTGCAGTGATAAAGTGGCAAAGCGTTCTTCAAAACGGTCATTCTTGAATGGAACAACCAATGGCACTTTTGACCCCTAGACAGGGATCCTTCAGAGTTTTCACTGTGAAGGGTGTAGCCATCagagggagtagggtgtagtcATGTTCAGAAGAGACCACATTCTTAAGTTAGTTTCATTTACAGAAGGATCATGCACCATGCCTCCTTgtgttattaaaacaaaaaaaatcatcatgcATTAACCCAGTtgatagaaatgataatttTGTGTGGGCAGGGTTAGATATTTTTAATGCCATCAACCACGAGAAGGCAAACTGCTGTCATGTTGTCCACTATTTGAACTGATGATGGTTTAACACCCTTGAGggtcaacatttaaaaaatgttttgtgtcatggctataaaatattacatcttTATATCTCACTGACCTTAAATGGAAATTAAACCAGTCTACAAGTGTGACGACT

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151146 lncRNA downstream 690059 6099635 ~ 6101470 (-) True G127913
TU150918 lncRNA downstream 1079766 5711559 ~ 5711763 (-) True G127705
XR_004578525.1 lncRNA downstream 1162916 5597825 ~ 5628613 (-) True LOC117597776
TU150794 lncRNA downstream 1318682 5448027 ~ 5472847 (-) True G127597
TU150791 lncRNA downstream 1364652 5412259 ~ 5426877 (-) True G127595
TU151658 lncRNA upstream 360 6793460 ~ 6793866 (-) True G128373
TU151747 lncRNA upstream 194317 6987417 ~ 6989486 (-) False ntng2a
TU151873 lncRNA upstream 386420 7179520 ~ 7227451 (-) True G128571
TU151895 lncRNA upstream 433266 7226366 ~ 7268653 (-) True G128591
XR_003403584.2 lncRNA upstream 653911 7447011 ~ 7450045 (-) True LOC113535317
XM_026928359.2 mRNA downstream 80415 6628168 ~ 6711114 (-) True LOC113535166
XM_026928499.2 mRNA downstream 500932 6282187 ~ 6290597 (-) True LOC113535258
XM_026928324.2 mRNA downstream 510768 6257381 ~ 6280761 (-) True tasor2
XM_026927818.2 mRNA downstream 539716 6241422 ~ 6251813 (-) True si:ch211-204d2.4
XM_026927905.2 mRNA downstream 552746 6233871 ~ 6238783 (-) True asb13b
XM_026927926.2 mRNA upstream 121116 6914216 ~ 6919712 (-) True endog
XM_026928569.2 mRNA upstream 129669 6922769 ~ 6989679 (-) True ntng2a
XM_034307042.1 mRNA upstream 129669 6922769 ~ 6930885 (-) False ntng2a
XM_026928018.2 mRNA upstream 334586 7127686 ~ 7163510 (-) True atp2a2a
XM_026927826.2 mRNA upstream 373683 7166783 ~ 7189430 (-) True ift81
XR_003403590.2 other downstream 1341115 5450251 ~ 5450414 (-) True LOC113535358
TU150609 other downstream 1945762 4842283 ~ 4845767 (-) False abt1
XR_004578567.1 other downstream 1977852 4774550 ~ 4813677 (-) False cdk16
XR_003403564.2 other downstream 2294634 4478075 ~ 4496895 (-) False zgc:113363
TU149241 other downstream 3723560 3062875 ~ 3067969 (-) False fam78bb
TU152424 other upstream 1000162 7793262 ~ 7796821 (-) False G129009
XR_004578561.1 other upstream 1049427 7842527 ~ 7856476 (-) False mad2l2
XR_004578562.1 other upstream 1050438 7843538 ~ 7856477 (-) True mad2l2
XR_004578560.1 other upstream 1050438 7843538 ~ 7856476 (-) False mad2l2
XR_004578559.1 other upstream 1050438 7843538 ~ 7856476 (-) False mad2l2

Expression Profile