RNA id: XM_026941051.2


Basic Information

Item Value
RNA id XM_026941051.2
length 4073
RNA type mRNA
GC content 0.41
exon number 10
gene id LOC113543063
representative True

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4592440 ~ 4762095 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACAACAACACGCTAAAATAATCGGCCACCTGTATGACACGCGCTGTTAGTACAGTGAGCCTGCTGTCCATCAGTCCCACCTTCCTGTAGGAGCAGAGCAGAAGCTGGAGGAggtggggaagaaaaaaaaaaaaaatcacgcgCTCCGGTTACGCGAGAGATGCGCGCGCCACCCTGCACGCTCCCACTCGTTACGCTCTTTTGCACAGAATTAATTTCGCCAGGAAAACGCGCGCGCTGATTCTGGCTGGGGGGCTGAGGGTCGTCTCGGTAGAGTGCAGGACGTAGTTTGGAAACATGAAGGACCGCACGCACGAGCTGAGGCATGGTAAGGAGaatgaagaggaggaagaggtggCAGTGGGCATGGAGAAAGGCTTCATGGACGAGTTCTTTGAACAGGTGGAAGAGATACGTGGCTACATCGACTCACTGGCTGAGAAGGTAGAGGAGGTAAAGCGGAAACACAGTGCCATCCTTGCCGCGCCAAATCCAGACGAAAAAACGAAAGCAGAACTGGAGGAGCTGATGACGGACATCAAGAAGCTGGCTAACAAAGTGCGCTCCAAGTTAAAGAGTATCCAGCAGACCATCGAGCAGGAGGAAGGACAGAACAGGTCTTCAGCTGATTTGAGGATACGGAAGACACAACACTCCACTCTGTCACGTAAATTCGTGGAGGTGATGTCAGAGTACAATGCGACGCAATCGAGTTACAGGGAGCGCTGCAAGGGCCGGATCCAGAGACAGTTAGAGATCactggaaGGAACACGACAAACGAGGAGCTAGAAAGCATGCTGGAAAGTGACAACCCAGCTATCTTCACTTCGGGGATCATCATGGACTCCAACATCACCCAGCAGGCCATGAACGAGATCGAAACCCGGCACAATGAGATCATCAAGCTGGAGAACAGCATCCGCGAGCTGCACGACATGTTCATGGACATGGCCATGCTGGTCGAGAGTCAGGGTGGGCTCATGAACAACATTGAATCAAATGTGCGTAATGCCCAGGAATATGTGGAAAAAGCCAAAGAAGACACTAAAGCAGCTGTTAAAGTGCAAAAAACAAGCAAGGTGAAGTTGATCCtgttaggggtgtgtgtggcattttgtctgctcatcctcatcatctcaCTCGCTGTTGGACTCAGCTAACATGCAAAGAAGCCGCAGTGTACTGGAAAGTCAACTTTACATTACTCAACCACACACTAGAAGAAGCCAGGATGGGTTTCTGAGTCTGCCCTGAACCACATGTTGCAGCGAGTTTGGATAATTATTCTATCCATAGACTAGTTTCATTGTaattatttagtatatttctgTATGGTTTGGGGTCATGCTCTGATAATATGCTTGCCTTTCAGTATCACAGTAATGTAGTCATGATagtgtaaatatgtatttaatatactgtgacaaaaaaacatttttactgaaccaaaatgtaaatgatttgtttatagTGACTGACAGTGAGATTATTTAACATGTTCACATCGTCACATTATTGAAGTAATAGAATTTTTGTCTGCAGAAAAATGTCACTCTATGAGCTCACGTGTAGATTGTTCCACCTACCTCActcctttctctcattcttgtgtgtgtgtgtgtgtgtgtgtgtgtgcattatgcCTGCTGTGTATCTGCATGCACTTCAAGaatgtgtaatgtttgtgtCGGTCTAATACCGTTTTTGACATGGCCTCATTGACTTCCCCTGATGATGTGCTTGTGCActacatgaataaatgaatgaatagacaCTTGCACTACAAGGACAGGTATCATGGGAaatggtgtacagtgtgtacagtgtagtcAGTTTCTATTCAGCTACATACAGAATCACATCAGCTGGCTAGATTTCCAACTAGATGGATTGCTAACTAGTTAGCAGGGTAAGAAGTTGGCAAAATAAAGTGATCACAAAATAATCACAAAGCAAGGTGGTGAGTAACACCTTAATCAGTGCTATGCATGTTTGTTAAGTTGCATAAATCAGTAGTTCTCAAAGTGAGATCCTGGGACCTCAAGGGTCCgtgattttttcatttagttacAGTAGTAGggtagtggtagtagtggtagtacaatccaccattatcaaagtaattataattatttttgaatagttattagcctgtttgactggttcCTTGGTTTTGAACAGTTTGACTGGTCCCTTGAATTGATTTGAAGTAGATTCAATCCAAACCTCAAAAGCTCAACAGTAAGCAGGCCTATAAATAATCAGCTTacacctaatgtgttctgttggtggaaagctCAGGAACAGAAAGGAATAGAAATATTTCTCGGTATTATtggacacatttaaataatgttcatgaaataaatatgtgttGAAGAGGTCTGTGGATGCTTGATTGTTCTCGTTCACCATTTCAAGTTTGAAAACTAACCAAATTATGAGAAGCCAGGATCAGACATGTTAGTTGACGAGACAAGTAAGTGCTacaacaaaagagaaaatatacagtatgtaaatatattgtaCAAATTTGTGAAAAAGTCCCACACCTAAAGATTGCACATCCCAAAACAGTCCCTTGCTTTAGTGCACAATCTCACCTGCATACTGTAGACCACGTGTATCAAACACAAGGCCAAATCCGGCCTCGTTTCATTTGGCCCGAGTGAACTTGAAAAAATTATACTGAAACGGCCCATAGTACTCTACTgctgaacattttcacactctGCAGAGTTCACAGCAGCTCAGCAGAAGAGCGTACGGGCTCACAGCTCAGAGTGCTGAAGTGTGGGTTAAAGCCAACGCATGTGTGCTGCtcttgatgtaagtcacactcgcATCTAAAAAACGATTTAGACGCACGTCAggtgttgtgctggcagtgtgcAACCAGAAATTCATTTAGatgggatgaggaaatatactaaattaaaTCACGATTGTTTTCCTGTTGTGTACAATTGGTAAATGTAACACGCTCGTGCATTTCAGATGGATatcagacagcagtaggagtGGTGATGCCACCAGTTTAATCACTTAAGGCATAAACTGTCTTTCCAAATTAATAACATAgccataaaatacctttatgacagttccaatGAACAcgattaaaataatgttaataatagggGGATATTATACCGTATAtaataaatcctgatctacttttcttttgtAGTAAACTCCAGCAGGCTACTTCACTGGCTCTCACCTCCATATCTCTTATAGCCATTATAGtctagctttcaaacagaaacagaaaaatgcataatgaatgcattcattaaaaaaaactctattataatctgtataataaatgttattttctaataatgcATACTTTTAAATAGTTTCTGTTAGCCCTTCTTCTTCCTAGATACATCCTGTTCTGATTTCAGAGCCTAGGTTATAGGGGttaatcaacaaaatatgttaaatattgaCCCTTCAGTTCTCAGAAATATGCTGATTTGCTGATGTAAAACACAATGGTGATGTGAGAGTAACAGTGTGGCGACTTTTACAAGCAaggaaacaaggaaacaggaaaacGATGCAAAACAGGAAAACGAAAGCTCACTGGtgatgaaaaggaaaaacaggaagtgcagcTTCATCCATGAAAATGAGAGAATGACCAAATCTCAATGAGAAGCTTCTCCACACATATTGAGCTGTTCCTTCAGAGCTCCAAGGGCTTGTCTAAGGAACCTCAAGGATTTTAAGTGAGAAATGACAAAAAGGAAGTCAAAGAGTGCAGGTTAAAATCAGTATTAGCACTGCTATTATCTTCTGTGAAGATGGCAATATCTGTTTGCGCCTTATTTATTCTTGATACGAGTCATAAACTCATAAAAGGAATTCTGACACCCccatgtggtgtgtgtattgtgtgtattcaTCTGCTGCATGTCTGGCTTTGGTTTTGGAATACATTTTGTTAGTGACTGTGTATGAATATAAAGCTCACTCCCGTTTTTAATGTAATCCTTGTGCAGTAATTTTGCCTTATTTTTTAGGTCTCTCTAATAATAAAGGTTAGTAACgctattaaaatga

Function

GO: NA

KEGG:

id description
K08486 STX1B_2_3; syntaxin 1B/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU372416 lncRNA upstream 64621 4517601 ~ 4527820 (+) True G314404
TU372412 lncRNA upstream 207576 4379637 ~ 4384865 (+) True G314402
TU372366 lncRNA upstream 297367 4294865 ~ 4295074 (+) True G314364
TU372364 lncRNA upstream 298712 4290254 ~ 4293729 (+) True G314362
TU372207 lncRNA upstream 592127 3996502 ~ 4000314 (+) True G314222
TU372650 lncRNA downstream 87367 4779938 ~ 4780145 (+) True G314609
TU372656 lncRNA downstream 95529 4788100 ~ 4788414 (+) False pou3f2b
TU372673 lncRNA downstream 108081 4800652 ~ 4801103 (+) True G314628
TU372681 lncRNA downstream 153621 4846192 ~ 4846717 (+) True G314636
XR_004580298.1 lncRNA downstream 191639 4884210 ~ 4893278 (+) True LOC117599956
XM_026941235.2 mRNA upstream 1485 4583027 ~ 4590956 (+) True bud23
XM_026940914.2 mRNA upstream 15793 4546135 ~ 4576648 (+) True LOC113543006
XM_026940916.2 mRNA upstream 15793 4546135 ~ 4576648 (+) False LOC113543006
XM_026941172.2 mRNA upstream 58467 4376994 ~ 4533974 (+) True cux1b
XM_026941423.2 mRNA upstream 241897 4315745 ~ 4350544 (+) True LOC113543315
XM_026941328.2 mRNA downstream 95277 4787848 ~ 4789835 (+) True pou3f2b
XM_026941103.2 mRNA downstream 208899 4901470 ~ 4958121 (+) True LOC113543089
XM_026940941.2 mRNA downstream 339678 5032249 ~ 5036445 (+) True LOC113543019
XM_026941160.2 mRNA downstream 367459 5060030 ~ 5070433 (+) False rabgef1l
XM_034314758.1 mRNA downstream 367604 5060175 ~ 5070433 (+) True rabgef1l
trnap-ugg_21 other upstream 645435 3946935 ~ 3947006 (+) True trnap-ugg_21
trnas-aga_16 other upstream 964328 3628032 ~ 3628113 (+) True trnas-aga_16
trnas-aga_14 other upstream 966411 3625960 ~ 3626030 (+) True trnas-aga_14
trnas-aga_13 other upstream 966944 3625416 ~ 3625497 (+) True trnas-aga_13
trnat-agu_12 other upstream 1703053 2889315 ~ 2889388 (+) True trnat-agu_12
TU372694 other downstream 244477 4937048 ~ 4958120 (+) False LOC113543089
TU372695 other downstream 244477 4937048 ~ 4958120 (+) False LOC113543089
TU372696 other downstream 244477 4937048 ~ 4958120 (+) False LOC113543089
TU372849 other downstream 395530 5088101 ~ 5091097 (+) False sptssb
trnat-agu_13 other downstream 526974 5219545 ~ 5219618 (+) True trnat-agu_13

Expression Profile