RNA id: TU198136


Basic Information

Item Value
RNA id TU198136
length 2080
lncRNA type sense_over
GC content 0.36
exon number 4
gene id AMCG00001392
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 1691676 ~ 1694986 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGACGAGAAGGTGAAGGTAGTATGGCGGTGATGCATACGTTGGTGAAGTGGGACGACAAAGACTCTTACACCGTGATTCCAACTGCTTGGATTCACAATTTTGATTTATTCAGCATTGCTGATGATGACGAAGAGACTACTCGAAACTTCAGAGCAGAGTGGAGAGACATGAACAAACCTCCAAAAGGTGGATGGCCTGTCCATGAAGCACAGATCATTATGACtattaaGTGAAGTGGATAAGCAAAACGTTAAGCAGCTCGAAAAAGGAAAACGCAagacttgaaaatgaaaacaaatgtcttcgaAATCGTATGGTTGatgAGATTCcagacattttggaaaatctgaATTTTTGTTTCACAAAAGCCACATTTATCAGCGATGAAGCCAAAAAGTGTCACCTTCAAGTGGTTCTGACACCCCCACACCAAATTCTCTGACAAAGAAGCACCAAAAACAGGTCTAAACACTCTTGGTCTAAAATATTACAAAGACaagGTGGAAATATTCCCAGGCACTGGAGCTTATATTGACAAACTGTCCTGGATCCTTGCAGAGAGGTGCAGCACGAATACATCATATGTAAGAACCCTGACGGTTGCTGTCTTTGACATTCCAACATTACTAAAGAGCAATCTTTGTGGTGGTGGCAGCAAGAGAGATCCAACTTCGGAGAAAAAGACACCTCTGGATCGCTTAAAGGTGGAAGCCATGTATATGGTATATAAATGCTGTTGTACAAAATGTCTAACTCTCCTTTTTAACTGTATATAACGAAAAGGGTTAGCATTTCCAATGTTCCTTTTgcctttgttttagtttcagaCACTagagttaatttattaataaataataataccttaCATGTAGCAGCTGGAAAGATCCCAAAGTGCTTTACTGACTCACTTCAACCACCACTCAAGTGAAGCACCCTCTGGGGTGCAGTGATTTTGTACCAGCAGATTACTACACAGCAATTAAGGTGGAGTCATAAGAAATTTGTTATACCTGATTCAGGAAAGCCTGATTTGGATTTACCTTGTAAATCACCTTGGATTAATGCTTCAGACAtaagaatacataataataataataataataataataataataataataaatagtgcaATGGGATCTTTGACAATATAAACTTTCATGTCTCATGTAAATTTGACTTTTGAGCAAATACTTCACATTTCAGTCCAGTTGTGCCACATCAGTGCAATGCTTAAGCAAGGTATTAATGGAGAAAAGGCTGCCTTTGCATAGCTGCTTCCCCAAGTACAGATTTTACTATGAACTGTAGTGCAAGACAAGTTTAAGTGCATACACCAAAACATCTaaatacacccacacacaaaattTTTGTTGATTTACTTTGGCAATATGTAACTTCTCAAAGATATGTGATacgtttttttaaaatatttttatatatctatgtGCAAGTCTTTAAATctctgtgaaaaatgttttttagcGGCTACCTTGAAAAAGTTTCCCTATACCCCAACGAGTGTAATTGGTGGTGCAAATAACAGCAAGATAAATGAACTACGATAGAATTAAACCAGAGTGAAGATTTGAAGAACCagatctgtattttttgttttgttttcaacagggttggggtcaattccaattcaatcTTTAAGTcccttttcaattcaattccaataaAGCCTATTCtttgaatgcaaaaataatttggaatttggaattgaTTTGAAGGAGGAattggaattaaaaaacaggaattgaccccaaccatGGTTTTCAGTGAGTGTTGATAGGTCAGGGCTTCTgtaaaaacttgttttgtttgtttgttttttaagacaaGCAATTTTTTGGCTGTTATCTTTTTgggtattgtttaaaaaataagttgtaaTACTTTTGCATACCACAGTATTTCAAAGTTATATTACAAAAACTGCATAGGACCATTGTGCTTCTTGTCTGTCCTTCTTTAGGTAACCCcctttggggggagggggggataaGAGTAAAGGTAATGTAAATGTTACTTATTTTTGaatacatgttgaaaataaacaaacattttgtgtATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198050 lncRNA upstream 587161 1101909 ~ 1104516 (+) True G157256
TU198041 lncRNA upstream 736703 954595 ~ 954974 (+) True G157247
TU198038 lncRNA upstream 752196 939239 ~ 939481 (+) True G157244
TU198025 lncRNA upstream 896120 795318 ~ 795557 (+) True G157231
TU197969 lncRNA upstream 1113557 577921 ~ 578120 (+) True G157195
TU198142 lncRNA downstream 13960 1708945 ~ 1711815 (+) True G157327
TU198152 lncRNA downstream 94406 1789391 ~ 1791527 (+) True G157336
TU198184 lncRNA downstream 202089 1897074 ~ 1897280 (+) True G157361
TU198195 lncRNA downstream 309148 2004133 ~ 2006321 (+) True G157372
TU198197 lncRNA downstream 309148 2004133 ~ 2083118 (+) False G157372
AMCG00001393 mRNA upstream 23974 1655576 ~ 1667703 (+) True AMCG00001393
AMCG00001388 mRNA upstream 53765 1632813 ~ 1637912 (+) True AMCG00001388
AMCG00001391 mRNA upstream 91690 1576221 ~ 1599987 (+) True AMCG00001391
AMCG00001389 mRNA upstream 155438 1507240 ~ 1536239 (+) True AMCG00001389
AMCG00001390 mRNA upstream 209763 1478128 ~ 1481914 (+) True AMCG00001390
AMCG00001394 mRNA downstream 27447 1722432 ~ 1893698 (+) True AMCG00001394
AMCG00001395 mRNA downstream 325338 2020323 ~ 2022140 (+) True AMCG00001395
AMCG00001399 mRNA downstream 361902 2056887 ~ 2058997 (+) True AMCG00001399
AMCG00001400 mRNA downstream 381768 2076753 ~ 2104545 (+) True AMCG00001400
AMCG00001407 mRNA downstream 517266 2212251 ~ 2218503 (+) True AMCG00001407
TU197970 other upstream 1102377 587975 ~ 589300 (+) True G157196
TU198192 other downstream 276896 1971881 ~ 2000928 (+) True G157369
TU198685 other downstream 2180224 3875209 ~ 3876273 (+) False G157781
TU198688 other downstream 2180224 3875209 ~ 3880779 (+) True G157781
TU198750 other downstream 2358012 4052997 ~ 4062290 (+) False AMCG00001430
TU199079 other downstream 3686705 5381690 ~ 5383064 (+) True AMCG00001480

Expression Profile