RNA id: AMCG00003507


Basic Information

Item Value
RNA id AMCG00003507
length 384
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00003507
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 6827929 ~ 6870265 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGAGGCCCGACGAGTAATGGGACAAATGCAGCGTGATGAACGGGCAGGCATAGAGCAGCCATGGGTCCTAGGAAGAGTGAAGGAACGGAGGAAATGCAGGCTGCAAGGAGGGCCAGGGGAGGTGCGGCAGGGAAAGAGCCACATGGGGCTACAGGGAGGCCAGGGGCAGCAGCGGCCGGTTACAAAGGAAGATTTTGCAACTTTTGATCACATTCTCTGCATGGATGAAAGCAATTTAagGGATCTCAACAGGAAAGCCAATCAGGTGAAAAACTGCAAAGCTAAAATTGAACTCCTTGGGACCTATGACCCTGAGAAGCAGCTGATCATTAAAGATCCCTATTATaCGAAATACCGATTAGGCTATTGGTCGAAATAA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003993 acid phosphatase activity molecular_function
GO:0004726 non-membrane spanning protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14394 ACP1; low molecular weight phosphotyrosine protein phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1177 lncRNA upstream 841535 5986038 ~ 5986394 (+) True G990
TU1170 lncRNA upstream 872109 5955604 ~ 5955820 (+) True G983
TU1140 lncRNA upstream 998184 5829459 ~ 5829745 (+) True G960
TU1088 lncRNA upstream 1269414 5557607 ~ 5558515 (+) True G908
TU1087 lncRNA upstream 1271623 5550745 ~ 5556306 (+) True G907
TU1358 lncRNA downstream 203139 7073404 ~ 7073609 (+) True G1146
TU1403 lncRNA downstream 494679 7364944 ~ 7365477 (+) True G1187
TU1436 lncRNA downstream 619180 7489445 ~ 7489881 (+) True G1218
TU1445 lncRNA downstream 627802 7498067 ~ 7498344 (+) False AMCG00003524
TU1466 lncRNA downstream 653596 7523861 ~ 7750465 (+) True G1241
AMCG00003506 mRNA upstream 2219 6818616 ~ 6825710 (+) True AMCG00003506
AMCG00003505 mRNA upstream 91559 6723530 ~ 6736370 (+) True AMCG00003505
AMCG00003501 mRNA upstream 181227 6620811 ~ 6646702 (+) True AMCG00003501
AMCG00003499 mRNA upstream 451630 6375259 ~ 6376299 (+) True AMCG00003499
AMCG00003500 mRNA upstream 560422 6266901 ~ 6267507 (+) True AMCG00003500
AMCG00003513 mRNA downstream 169546 7039811 ~ 7040909 (+) True AMCG00003513
AMCG00003516 mRNA downstream 174951 7045216 ~ 7047403 (+) True AMCG00003516
AMCG00003523 mRNA downstream 538280 7408545 ~ 7410129 (+) True AMCG00003523
AMCG00003522 mRNA downstream 552538 7422803 ~ 7438447 (+) True AMCG00003522
AMCG00003529 mRNA downstream 583146 7453411 ~ 7459476 (+) True AMCG00003529
TU1202 other upstream 333024 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 1778860 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 2385563 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 2907243 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 4619920 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 4703466 11573731 ~ 11577329 (+) True G1989

Expression Profile