RNA id: AMCG00003628


Basic Information

Item Value
RNA id AMCG00003628
length 6441
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00003628
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12132846 ~ 12144928 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGTAATTACCTTGATGAAATGTATGGTGACTTCAATCGGGGTCCTTCTGACTCGCCTTTAGCCAGTGATGACAATTCAGTGGATATTTATTCGGGGCTTGACAATGAGAACAGTCCACATCCCAGTGGCGGCACAGAGAAATCGAGGGCGTTGTTTTCACCAAAAAGGCTTAAGGACTCTCTAGACTTGTATGAAGAAATCCTCACTGAAGAGCAGAAGGAACGGGAAGCCACCTACAATGACaacttacatttacataatgaaaacacacatcTAAAGAAGAACATATGTGCTCTCATTAAAACGGCTCGGATGGAGATTGTCCGCAAGGATGATGAAATCAACAGACTTAATCAAAGatCTGTCCGAGGTGGATTTGGTCAGTCTTTCCCTAGACCACTGTTCAGCCAGCAGAGGAATTGCATCACTAGGCCGAGCACAGATACTACTGGGACAGCTAGCACAGCTGAAGTTCGTGAACCCAGGGTTAACTGTGCTACGAGAGACGGAAATCAACAATCGCTAAAGGACAGACATGGTTTTGTTCAAACATGTGGAACTTCAGTTGTAGATGCCTCAAATCCAGGTCCTGGCTctcataaaaacatacaacttCCTACTGACTCTTTGACATCCAATAATCAGTGTAGTCCTGCTGGTACTAACTGTAAAAAAGATTCCAGGAGCCTGGAGCCTCTATCCAGAGAAGAACCTGGTCAGAACAGCAAATCCTGCTTGGAAAATATTGAAAGACGACAAAATGTTACCCAGAAACGTTCAACAGAGCCCCAAGAAATCAGAGACGCAAAACACAGACACCACGAGGAAAGAAGTCGCAGGACCCGGGCTGATGGTGACTGTAACAAAGAAGGTAAaacgagagagagggaaaaaactGCCAGAGAGCATAAAGAGTCTGAAAAAGATGGCACGAAATCCAATCGAAGGAGAAATCAGTACCTGGAGAGAGATTTGGAGCCTCCTAGGAGGTCTGGGAGAGGGAAAAGCCCTACCCTAGATTGTTCACAGCGTACAACTACCAGTTTGCACAGTTCAAAGAATCGGGCCAGAGACAGTGAGGTACAGATGAGAAGTAATAGTCAAGATCAGGAAAGGTGTGACAAGAGGGTCCATGAATCCAGTGGCAAAGAAGGAAAGCGCACAACTAGCTCTCACCAAAGTCGCCACAGAGACAAATGTTTAAGTGCCTCCTCCAGTCGGAGAGGAGACCGAAGTCCCTTGAGAGAGGACCACAGGAAAGAAGAGAGGAGGCGAGATGAAGAGAAGAAGGGCAGACAGGAGAAAAGCAAGGAGCAAGACCGAACAAGCGAGAAGACAAAAGACAGAAGTGAAAGCAAAAATGACGAAGAGAAAAAGCAATCTGAATCCCATGTTAAATCTAGTAGCCACAAGAATGTCTCTGTGCCTGGCAAGCTGACCAATCCAGATAATACTGCCGCCAGAAAAACAGCTGCAGAGAAGAAAATCCCACCTGCCGAGAAAGACAGTCCGGAgaagtgtttttcagagtcGGATATCGTCAGTGTCAGTGAAGGGAATCCTGTAAAAAGAGCCGAAGAAACTAGTTCGGTTAGGAAATTAAGTTTCATGGAAACTCTAAATCTTACTCTTTCACCTGTGaagaaaccaaaacagtcaTCTGAAAACCAAGATGAGGGTATCAGCCATTTAGAAGAGGGTCCTTTGGAGGGTCAGGAGAAAGAATCTAGTCTGTTTGATTTAGAAGAAAATTATTGTGTTATAGATGAGGTTGAAACAAGCTGTGAGTCTGTAGAACATAGCAACGAGGTCTTGGCTGTTCCGGGTGAAAGCTCTGTGTCTGTAAGTCCCATTGAGGAATCTCTACACAGCGATCCTGTGAATGATGGAAAGGAACCTTTGACATCTGCTGAAAGCGGTCCAGTTCAGACTCGGACAATAGAGTCTGAAGATGGAGGTCAATTGGATCAGGGGATAGTAACAATGAGTGTGGAAATGGAAGTACCTACTGAAACTGTAGAGCTTGAGGCTAAAGGTACTGGATTAGAGAGTACCCTCAGTCCTAAAGGTTCTGACACAACCCCAGAAACTGAGGCCCCTGAAATTCTTTCACACCTGCCCAACGAGTCTGTTAATGCTGATGCCCCAAATAATGGATCTGATACTGTAAATAAAGTTGCAGATCAAGTTAAGGAGTGTACTTCAATCGCAGAAATTGACAAACCTTCGGTTACCGAGACCAGGGATGTAGAAGCCAATGATACCGTAGCTGAAATTACTCAAAATCTGTCGGATGTCACTCTGGAGAATCCTGATGAGCATGATAATGGTGTTCAGATGAGTATAACAGCTGTCCAGAATCAGACAGgtttattaaataatgcatcCAGTGCTACTACCGGTCCTCAGGATAATCTAACAAATCGAGAAGATTGTGATATGTCCACAGATACAGTGTCCAGTACTGTTTGCATAGAAACAGAACCCCAAAGTGTAAATATTGAAGCAGTTTCAGATAACCTAGGAACTGTTGTTTCAAGTCTAGATCCTGAAAAAGCAGGAGAAAAAGACGAGTGTGACACAAACTTCAGCCCCCGAACAACAGAGATATCGAAAGTGAGCAGCACGTTGGGTAGTGAGATTGTGTCCGCTGATCAGGGTCCCGGCAGCTCCCCGAAGGCACAGGAATCTAACCAAACCCCGGCAGAGACGGAGAAGACCTGCTGTAATTCAGAGCCAGACTCTACGGAAGCAGAGAAGATGACTGTCGAGCCGTCGCCATCCAAGTCGCTTCCAGGCCGGACAATAGAGCTCGAACTTCACGATGAGGATTCCATGATGGTTTCCCTGAAAAGCATCCGGCACATATCTGAAGTCATCAGCCCTCTCACGAGTCCCATTCGTCCTATGAGGAAAAGCCCCAAGCATGTCTCTGCTGTCAAACTGCCTTATGTCAAGAGCCTGAGCAAAGATCTCTCCAGTGTGACTGAGGACTTCAGTTTAAATTCAACAATGATGGGAGTGAACAAGGAGAATCAGAAACCAGAATTCAGCTCCACAGAATGTGCCAAAAAGGACTCTGACAAACTCCCATCCTCTtctgaagaggaggaggaggaggaggaggaggaggaggaggatgaaataGAGGAAGGAGAAATCATTAGTGACAGCGAAGGTGAGGAGCTGCCAGTCATCATCAGTCCTCCGCACAAGAATGCGAGTCCAGGCAACAATGTAAGAAAGGTACCGAGTCCGAAAGCTGACACGCTAGGCAAGAGGCAACATAACAAGTCATCTGTTACTCAGGGCAGCTctggaaagaaaagtaaagtgaCCTCTCCTCCAGTTAACAGTTCGCCTTCAAACAAAAGACGCTTTCGAACTGTCTTGCCATTTTTGCCCAAAACAGACCCATCCAGTATCCAAGATGTCATGGACATGTTAAAATTTATACGCAAACAGATCCGGAAAAAGTACATGAAGCTTCAGAAGAGCTTTCCAGTTAAAACCTTCTACAGCATCATTGACATGTCTCTTTGGGAGTTTACTGACTTTGTCAATAATCTGAACTGTACCAAATTGTGTAATtctgagaacattttaaaaccaaagctGTGCAAAATCATCTCAGCCACTCTGAAGAAGATTTCTAACAATGGCATCGTCAACCGCATCTTTGAACAGCAATCTCCCAACCTGAAGAAAAAGCTGTGGATGTTTGTTGAAGATCAGTTTGACTTCTTATTTAAAGAACTGCAGACAAATCTAATTTCCATGTGCAAATCTGGTGACCTGGTAGAATCATCAGAGGAAGGAGGAAAGCaagaagcaaagaaagaaaaggacagGAAAAGGAAAGCGCACACACGTCCAGTTGAATCGCTGCAGCCCCCAGTCAACATTGCCAAAAGAAATGTAGTGGAGTTGACATCAAAGGACGCACCTGAAATGCCTGCTAAAATTAAGTCCCCAACCAAAATCTCTCTGAAAACTGGTTTAGGGAGCAGGGGCAAAAACCTCAGATTGGCCATGGAGACTGATTCTCACAAGCCAGAGGCACAATTAAATGGTTGTCCTGAGCAAAACCAAGACCTCCCAGGTCTTGGCAAACCCTCTACTGTTACTCCATcgaaaaatgtttctttaatagGAAGCTCAGCACCAAGCATCGGCCATGCTTCAGTACATGATAAATCAGACTTTGAAATCCTCACTGAGCAGCAGGCATCTAGCCTGACTTTCAATCTTGTCACAGACTCGCAGATGGGTGAAATCTTTAAGTGTTTGCTTCAAGGCTCGGACCTTTTGGAGCAAAGTGTTCCTGGAGGAGATAACCACGGCTGGCCGATTGGTACACCTCGAAAAGAAGCACCTTGTGAGGAGAGTTTGCAGGGGCCATCAACTCCACACAGGGCTTTAATGGCATTGAGAACTCCAACAGGTGTCCCTTGGTCAACCGTTACACCAGAGAAATTCTCATCTTTTAGCACTAGAATAGGTGTTCCCTTGAACCCAGCTGCACTGGACGAGAGCTGCATGTTAGAAGTCCCTTCCAATGTGCCCTTTCATAAAATGGTGCCGTCCACTCACATTATCCAGAGACCTTATTCACTTTTGGCTGAAGATCTGGCAGTCTCTCTCACCATCCCCTCCCCCCTCAAATCGGATGGCCACTTGAGCTTTTTGCACCCTGTAAACGGAGAGATGTCATCAGCACCACAGAGCATCCTGAGAGCTCACTACAGCGAGGATGCCTTGCTTGATGGAGAAGATGCAACTGAGCAGGATATCCACTTGGCGTTGGACTCGGATAACTCGAGCAGCAGATCAGGTAGTGGTGGGAGCTGGCAGGATGTCCCACCCGTTTTCCAGTTTAAACCCCATTTGCCCATGCAGGCCGTGGTGATGGAAAAATCCAACGACCACTTTGTTGTAAGAATCAGACACACATCCACTGAGCCTGATCAGAGTGACTCTGTTAAACCCCCAGAAATACAACCAGCCACAGATGCAGTAACTTGTTCTACTGGAACCCCCACAGCACCATCAAATGATGAAACTAATGTACTGCTTGCAGAGGAAGACCCATCAAAACTGTTAGTTCTGGACAACAGCGTCCCTGATCCAGATCCAGATGTTAACTGTATGGCTTTGGCAAAGGAGCCATCTATAGCGCCATCAGACTCTGAGGGGGAACGATCCACTGGGCCAGCTGAGAAATCTAGTCTTCCCACCGAGGAGCCCAGTGTGCCTGATCAGCCCAGCAGTGCACATTCTGCTGGCAAGAAGCGAAAGAGACACCACTCGGAGCGGGTGGCAAAGAAAGCGAAAACGGAGGTGACCCAAAAGGGccagaagaaacagaaaaagaaaaagaagtcCAAAGACAATCCAGAGAAAGGCACCAAGTCTCCCAAAATGAAGACTAAAACCGCACCCCCTCCCGCATCATCACCTAACAGTCTATCTGCCAAGAATGTAATCAAGAAGAAAGGAGAAGTTGTCGTGGCATGGACCAGGGATGACGACCGAACTATCCTAGTGGAACTCAAGAAGAAAGGGGCTTCTGAAAAAACATTCTCTTCTCTGTCTAGGAAATTAAATAAGCTGCCAGCTCAGATTGCAGAGAGGTTTTGCCAGCTGATGAAGCTCTTCAAGAAGAAAGAACGGATGGACAGCTGATCTCCATGGACTGGGATGCCAGTTTAAGCATCgtgggggagaaaaagaaagaaaaagcaagtcTGGAAACATTAACAAGTGTCCACAGTATGCAGTGTGATGTATCCACTGTCATTGTTGTGTGTAGGTCAGACTGCAGACACTGGACTCCCTGGGCATGTACATCCCCCTCTGAGTGAGGGTCTCACTCTGGGTCCAGAACAGCCGTGCCTATAGCAAAGGCAAAGCCATCTACGAGTGAGAAGCAAGCACTTGTCCTTATTTTGGAACTTTTATGTCCTGTATTGATGATGctgggaagggaaaaaaacgTATTTTCACCCTACTCTCAAAGTAATGCCTTAAGTACCACAACCACACTGCATAAAATGAGGGTTAATCGCCAGGATGATGAAACATTATCCTTTTTTGCTGTTTTCATCACGGAGACCGAAAGCAAAATAATCCTGTACTTGGACATCACTTTCTCAAGCAAGTTGAATCTGAAATCTGTTACATTACAGTGGTCGAAACGAGGAGCTAATTTGGAAGGCAATTCAAAATGTAGGGTATTTCATACCTTACACAAACTTCCTGGTATACATtgctaaatgttaaaaatgaccTCTATCAGGTACTGTTTATCAAAATAAACCTACATgttagtttcattttaattttaacatttgtgGTTGGTGAAGTGCACTAAGAACctaataaatcaattttttcCTCTTGAGGTTACTGTATATTGAGAGCAAATGTGCtgaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2511 lncRNA upstream 43860 12087537 ~ 12088986 (+) True G2086
TU2454 lncRNA upstream 104653 12026126 ~ 12028193 (+) True G2042
TU2434 lncRNA upstream 226658 11905983 ~ 11906188 (+) True G2027
TU2424 lncRNA upstream 301426 11813122 ~ 11831420 (+) True G2018
TU2400 lncRNA upstream 402855 11725083 ~ 11729991 (+) True AMCG00003614
TU2565 lncRNA downstream 75394 12220322 ~ 12259643 (+) True G2125
TU2587 lncRNA downstream 242675 12387603 ~ 12388058 (+) True G2139
TU2631 lncRNA downstream 757707 12902635 ~ 12903622 (+) False AMCG00003643
TU2723 lncRNA downstream 929760 13074688 ~ 13080021 (+) True G2250
TU2742 lncRNA downstream 953633 13098561 ~ 13101316 (+) True G2264
AMCG00003624 mRNA upstream 107912 12006436 ~ 12024934 (+) True AMCG00003624
AMCG00003622 mRNA upstream 276113 11851827 ~ 11856733 (+) True AMCG00003622
AMCG00003620 mRNA upstream 292350 11839737 ~ 11840496 (+) True AMCG00003620
AMCG00003621 mRNA upstream 304416 11824785 ~ 11828430 (+) True AMCG00003621
AMCG00003615 mRNA upstream 390208 11732555 ~ 11742638 (+) True AMCG00003615
AMCG00003630 mRNA downstream 2712 12147640 ~ 12148899 (+) True AMCG00003630
AMCG00003634 mRNA downstream 705205 12850133 ~ 12854702 (+) True AMCG00003634
AMCG00003639 mRNA downstream 721489 12866417 ~ 12868471 (+) True AMCG00003639
AMCG00003633 mRNA downstream 727585 12872513 ~ 12880357 (+) True AMCG00003633
AMCG00003642 mRNA downstream 746240 12891168 ~ 12901958 (+) True AMCG00003642
TU2385 other upstream 555517 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 641403 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 2351944 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2869378 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 3480442 8649125 ~ 8652404 (+) True AMCG00003534
TU2685 other downstream 892509 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1010132 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 2273588 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 3890735 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 5536889 17681817 ~ 17683988 (+) True G3047

Expression Profile