RNA id: AMCG00009759


Basic Information

Item Value
RNA id AMCG00009759
length 2044
RNA type mRNA
GC content 0.68
exon number 12
gene id AMCG00009759
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45559977 ~ 45572255 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGACAGCTGATCGCGCCGCTGCGGGACCGGGGCTGCTCTCCTCCGGGGACGCCGCCTCTCTGCTGCCGGGGCGCGGAGGCGCACTGTCGCGACTGGGGAACTTCTGCACGTCTGGCTTCGCTGAACGCAATTTTATAACAACAGGAGGGGAAACCAAAGTCTGTctatgtgtgtatttctgtaagTGTGGATGTGCGATGAGTGCGGAGCGAAGACAGCAGCGTCGCGGCCCCGTGCGGACAGCGAGGAAACCCGGCTGCGAGTCTCCCGGCGCCCTTAGAGGAACTTTCTGCGGGACGGAGTAACAGCGACAAAACACGCGTCGAGGAAGAAAACAGGAGTCCAACACACCACAGCCGCCGCCGATCACAGTCCTGCCCTGCTGTGAGGGCTGAGGTCCGGCCCGGAGCCCCGCTGCCCGGTGCGGGTCGTGTCCCTGCGGCACGGAAGAGCAGTCTTGGATCTGGGCAGCTGAGAGTCGGGCAGAGCTGCGCAGGATCGCTGTAGGCGGAAAGGTCAAAGGGTGCATGGCCTCATCAGCACGAGACTGATTCCTCAGAGCGCTGAGGGCAGTGGCTGTCTGTGATTGCAAAGGACTGGCCAGGCCCGAGCTCAGGGGCACCACCTTGTGGCCAGTGGGGGCGTTGCACAGGGCAGCGGGACACAGCGCTGAATGGCCACGAGCCCCCAGCACAACATCACCCATGAGTACTACTGCAAGGTGAGCTTACGATTGGCTGACAGCGTGAGTGGCCGGACCACCCAGGAGTCACATGACATGGAGGTCAAAGGGCACATGATCACCGCCATGGGGCTGGGGGGTCCTGgTGAAGGCAGCAGGCACCGGGCAGAGCGCGTGTTGGAGCTGCAGGAGCGACGCCGGGTCCTTCAGGGGGCTCTGAGCAGCCggctgggggagctcaggagaCTGTGTCTACAGGAGGCTCGAGTTCCCTCTGGAGGCTGGGGAGAGACCCCCCCACGTGCGGCGCAGGGTGGGAGTGTCCCCTCGAGGCCCGGGCAGCAAGGGGGAGatgaaGGGCTGGTCAGGTCTGAGAGCAGCTCTATGTCCGACTCCACTGGACATGACAGTGAGGAGGCTCCCCCCAGCTCCAGGGCTCCCCCCGAGTGCGTGTCCCCCTCGCGGCCCCGGCTGACCCCCAGCAGCCCGGAGAGCAGGCTGACCCGCAAGCTGTCGCCCGTGGAGATCTACTATGAGATGAGGACCCGCAGGAACTCGGTGGCCAGCTCTGCCAGCCCCAGCCGCTCTCTGCCCCGCAGTGCATCCAACGTGGAGGGGCGCAGCGTCCCGGCCACACCGCTGCTGTCCCGGCCTGggcccccccccaccacccaggCCAGgCTGGAGCCGTCCTGCAGTGTGGTGGCCGTGGGGGTCGGGGTGGCGGGGGGGGTGTGTGTCCGGCAGTGGGTGGACGCCCCCGACGCACCTGGACCGCGTCCCCCTGTGCAGACTGAGGGGGGGGCCGTGGGCGGAGGAGTGAGCTGTCAGTACGGCTCCCGGACTCGCCGCAGCAACAGCTCCGAGGCACTGCTGGACCGGTCAGGCTTTCCTGAGGGCGGGGGGAGTGGGTGTGCGGGACCAGGAGTGCGTGGAGGAGGGGGTGGACCGGTGGGGGGCATGCCCTCGCGGGGGGGGCCCTACAAGAGCTCCGAGACTCTGACCGACGGCAAACTGCGGCACGCCCCCCGGGGCAGCCCGGAGAGACGCCCCCCGGACGTGCACGGCCCGGAGCCCGGCAGGGTGCGGGCGTCCATGGGGGGGCGGGCCGGGGGGGGGTACAATGAGATCCTGCTTGACTACATCTgggagaagcagcagcagcagcagcagcagtaccAGCAGCcgcagctgcccccccacctgctGCCACCCTACGGCCCCGGCAGCCCACTGCTCCTGAGGGGCCAGCCGGGGGACACCAGGCGGGTGAAGGTGACCCGGACCAAGTCCTGTGGTCCCTTCATCCCGCTGCAGCAGCCGCACGCCGACTCCCTTGTCTTCTCCGCGCTCCCGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73604 lncRNA upstream 47244 45512636 ~ 45513047 (+) True G58876
TU73534 lncRNA upstream 161838 45339605 ~ 45398453 (+) True G58821
TU73535 lncRNA upstream 227435 45329784 ~ 45332856 (+) True G58822
TU73548 lncRNA upstream 282695 45276488 ~ 45277596 (+) True G58830
TU73541 lncRNA upstream 285258 45266939 ~ 45275033 (+) True G58825
TU73708 lncRNA downstream 1015 45573270 ~ 45575964 (+) True AMCG00009760
TU73715 lncRNA downstream 10264 45582519 ~ 45584669 (+) False AMCG00009758
TU73710 lncRNA downstream 12503 45584758 ~ 45585330 (+) True G58971
TU73711 lncRNA downstream 12569 45584824 ~ 45585330 (+) False G58971
TU73754 lncRNA downstream 67380 45639635 ~ 45640037 (+) True G59006
AMCG00009757 mRNA upstream 28855 45521353 ~ 45531436 (+) True AMCG00009757
AMCG00009761 mRNA upstream 49254 45507767 ~ 45511037 (+) True AMCG00009761
AMCG00009750 mRNA upstream 83294 45466659 ~ 45476997 (+) True AMCG00009750
AMCG00009752 mRNA upstream 106312 45437969 ~ 45453979 (+) True AMCG00009752
AMCG00009751 mRNA upstream 124426 45422527 ~ 45435865 (+) True AMCG00009751
AMCG00009760 mRNA downstream 1015 45573270 ~ 45574076 (+) False AMCG00009760
AMCG00009758 mRNA downstream 4284 45576539 ~ 45584727 (+) True AMCG00009758
AMCG00009763 mRNA downstream 26352 45598607 ~ 45629378 (+) True AMCG00009763
AMCG00009764 mRNA downstream 70983 45643238 ~ 45647541 (+) True AMCG00009764
AMCG00009765 mRNA downstream 77829 45650084 ~ 45656237 (+) True AMCG00009765
TU73602 other upstream 51187 45508194 ~ 45509104 (+) False AMCG00009761
TU73437 other upstream 502417 45056065 ~ 45057874 (+) True G58747
TU73251 other upstream 908324 44632750 ~ 44651967 (+) True G58600
TU73244 other upstream 960963 44584562 ~ 44599328 (+) False AMCG00009700
TU73232 other upstream 989760 44567365 ~ 44570531 (+) True AMCG00009694
TU73851 other downstream 182331 45754586 ~ 45755115 (+) True G59084

Expression Profile