RNA id: AMCG00020607


Basic Information

Item Value
RNA id AMCG00020607
length 1820
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00020607
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 25855088 ~ 25861732 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTAGGTTTGCTCTTCTATTTGAATGTCTATGGTGGCATCCGTTTCCTCCATTTTCATCGTATATCCCAGTCCCTGTTGTTTATTATCGGTTTTACTGCAAAGCCCCGGAGGATTTACGAACTACAAACACAAAAGGACAAATCTGTCACCGCTTTCTCGTTGGGGATCCGTTAGTTGACGATTGGATGATTCCCTGTTGAGGAGTGAGATGAAATGACAACGTCAACATTACAGAAAGCGATTGACCTTGTGACCAAAGCCACAGAAGAAGACAAGGCCAAGAACTATGAAGAGGCGCTGAGGCTGTACCAGCATGCGGTGGAGTATTTCTTACACGCCATCAAATATGAGGCGCACAGCGATAAGGCGAAAGAGAGCATCCGGGGGAAATGTGTGCAGTACCTGGACCGAGCCGAGAAGCTGAAGGActatctgaaaaacaaagataaGCAGGGGAAGAAGCCGGTGAAGGAGATGCAAAATGACAAAGGGAGTGACAGTGACAGCGAGGGGGAGAACCCAGAGAGGAAGAAGCTCCAAGAGCAGCTCATGGGTGCGATTGTCATGGAAAAGCCCAACGTGCGGTGGAATGACGTGGCTGGACTGGAGGGAGCGAAGGAGGCTCTGAAAGAAGCCGTCATCCTACCCATCAAATTCCCACACTTATTTACAGGCAAGCGCACTCCCTGGCGTGGGATTTTGCTCTTCGGTCCTCCTGGCACAGGCAAGTCCTACCTGGCCAAGGCTGTAGCCACCGAGGCCAACAACTCCACCTTCTTCTCTGTGTCCTCCTCAGACCTCATGTCCAAGTGGCTGGGAGAGAGTGAGAAGCTCGTGAAGAACCTCTTCGACCTGGCTCGGCAGCATAAGCCTTCCATCATCTTCATCGACGAGGTGGATTCCCTGTGCGGCTCGAGGAACGAGAATGAAAGTGAAGCGGCCAGAAGGATAAAAACAGAGTTTCTAGTGCAAATGCAAGGTGTGGGCAATAATAACGATGGGATCCTGGTCCTTGGAGCTACGAATATCCCTTGGGTGCTGGATGCTGCCATCAGGAGGAGGTTTGAGAAGCGCATCTACATCCCCCTGCCAGAGGAGCCGGCCCGAGCCCAGATGTTCCGGCTGCACCTGGGGAACACGCCGCACAGCCTGTCCGACACAGACATCCGGGAGCTGGCCAAGAAGACGGACGGCTACTCCGGCGCCGACATCAGCGTCATTGTCCGCGACGCGCTCATGCAGCCCGTGCGCAAGGTCCAGTCCGCCACGCACTTCAAGAAGTTTCGCGGTCCTTCCCGGACGAATGCCAACGTGATCGTGGACGACCTGCTGACCCCTTGCTCCCCTGGCGACCCCGACGCCATAGAGATGACCTGGATGGAGGTCCCTAGTGACAAACTGCTGGAGCCCATCGTCTGCATGTCGGACATGCTGAGGTCCCTGGCGACCACAAGACCCACCGTCAATGCCGAAGACCTCCTGAAAGTCAGGAAGTTCAGTGAGGACTTTGGCCAGGAGGGTTGAAGACACGTGCTTGGTACAGGGACGTCGAATCAAAAGCtaaaacaaactccccagcaccGCCACCACAAACGCCACTACTGTTGCTCCGCCTGCTATTACTCCGCCTAATCAAGTTGGCTGACTTCACAAACTCAGACGGgcatgaaaaaggaaaaaggaattgtatttatttattttgacttgaCAGTGTCTGAATCTAGAAGGCTGTTTCacaatccatttatttttatttttatggggGTAGATGAAGGAGGctccagtaaaacaaaaaagtgtatgtgtatatatatatat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80613 lncRNA upstream 35306 25819391 ~ 25819782 (+) True G64436
TU80576 lncRNA upstream 76106 25776407 ~ 25778982 (+) True AMCG00020603
TU80568 lncRNA upstream 126754 25721933 ~ 25728334 (+) True G64406
TU80553 lncRNA upstream 211714 25640593 ~ 25643374 (+) True G64394
TU80531 lncRNA upstream 283326 25569390 ~ 25571762 (+) True G64378
TU80641 lncRNA downstream 32418 25894150 ~ 25895525 (+) True G64457
TU80673 lncRNA downstream 73173 25934905 ~ 25940113 (+) True G64478
TU80711 lncRNA downstream 232931 26094663 ~ 26096921 (+) False AMCG00020621
TU80767 lncRNA downstream 333481 26195213 ~ 26197405 (+) True G64555
TU80768 lncRNA downstream 339332 26201064 ~ 26202040 (+) True G64556
AMCG00020606 mRNA upstream 524 25839704 ~ 25854564 (+) True AMCG00020606
AMCG00020608 mRNA upstream 43413 25810166 ~ 25811675 (+) True AMCG00020608
AMCG00020609 mRNA upstream 71840 25782048 ~ 25783248 (+) True AMCG00020609
AMCG00020603 mRNA upstream 77571 25762135 ~ 25777517 (+) False AMCG00020603
AMCG00020598 mRNA upstream 167912 25681616 ~ 25687176 (+) True AMCG00020598
AMCG00020616 mRNA downstream 15523 25877255 ~ 25885079 (+) True AMCG00020616
AMCG00020611 mRNA downstream 58907 25920639 ~ 25932142 (+) True AMCG00020611
AMCG00020610 mRNA downstream 110801 25972533 ~ 25989687 (+) True AMCG00020610
AMCG00020617 mRNA downstream 155159 26016891 ~ 26029449 (+) True AMCG00020617
AMCG00020621 mRNA downstream 193555 26055287 ~ 26096957 (+) True AMCG00020621
TU80525 other upstream 301768 25550911 ~ 25553320 (+) True G64372
TU80336 other upstream 770334 25078142 ~ 25084754 (+) False AMCG00020573
TU80333 other upstream 778398 25074057 ~ 25076690 (+) True AMCG00020572
TU80130 other upstream 1372974 24478835 ~ 24482114 (+) True G64046
TU79996 other upstream 1799496 24051989 ~ 24055592 (+) True G63939
TU80958 other downstream 1554264 27415996 ~ 27418520 (+) True G64730
TU81160 other downstream 3011898 28873630 ~ 28874072 (+) True G64887
TU81182 other downstream 3146931 29008663 ~ 29009601 (+) True G64908
TU81272 other downstream 3602832 29464564 ~ 29465712 (+) True G64979
TU81277 other downstream 3663983 29525715 ~ 29575346 (+) False AMCG00020684

Expression Profile