RNA id: XM_043250874.1


Basic Information

Item Value
RNA id XM_043250874.1
length 2985
RNA type mRNA
GC content 0.45
exon number 7
gene id cnih2
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10390116 ~ 10398224 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCAGATTGATGGGAGGAAAATGAGGGGAGAGAGGACAGACATACACAGACTTGCGCCGCTGCTTCAGAAAACACAGATTGCATACCGAGGACATTCATCCTCCGATGTGCCCACAAGATATTTTTTAAGGTGTTCTGCTGTAAATAAGGTGTGTGGACCCAGTGTGCAGCACTAATCTTAGAGACGGGGGAGGGGAGCGATTCTCCACATACATACAAACCCCCCTCTGCCAATCAGAGAGAAAGACTGAGAGGGAGAAGGAGAGCAAGTGAAGGAACAGGGGAGACGGCAGAGAGACTGAAAAGAGGAAACAGCTCAAGCAGTTATCTTAGgtggacagagagaaagaattATACACGAACACACACTGTCCAGCCACACGTTACAAGGCGCTCCAGCCAGCGGAGGCGGATAACCAGCCAGACGCCTCATATCTGCAGCTCCAGACCAAGAAGATTCCTCTCGAATTCTCTCCCGACTTCATCCTAAGCTGGACCGCGAGCTTTAAGGGGAGAGACAGAAGAAGAGGGAAGTGCTTTGCAACTTCCTCGAAGGGGTGAGAGTGTAAggagagtgacagagagagagagagcaggggaAATCTCCCCCTCGCCCTCTCTCGACCCAGATCACCGTCAGGCTGGCTGGCACAGCCATGGCCTTCACCTTTGCGGCCTTTTGCTACATGTTAACACTCGTGTTGTGCGCTGCCCTCATCTTCTTCGTCATCTGGCAGATTATCGCTTTTGATGAGCTGCGCACAGACTTCAAAAATCCCATCGATCAGAGCAACCCCACCAGAGCGAGGGAAAGAATATTGAACATTGAGAGAATCTGCAACCTCCTCCGAAGGctGGTGGTTCCAGAGTATTCCATCCACGGGCTGTTCTGTCTGATGTTCATGTGTGCAGGGGAGTGGGTGACTCTGGGCCTTAACATCCCCCTGCTCCTCTATCACCTCTGGAGGTTTTTCCACCGTCCTGCAGATGGGTCTGAGGTTATGTATGATCCAGTGAGTGTGATGAATGCAGACATTCTGAATTACTGCCAAAAAGAGTCCTGGTGCAAGCTAGGCTTCTACCTTCTCTCCTTTTTCTACTATCTGTACAGTATGGTGTATGCTTTGGTCAGCTTCTAAGGGATCAAATGAAGTACAGATGATTGTGAAAGGAAGGAGAAAACGACAGAATAAAGACCAAGCTATGTCGCGCTCTCCTCTCCCTCATCCTCAGACCTTGTTCAGCTCCTCCTCAGATCTCCTGGGTGGGGATGGACGATGGACAGATGTAGAAAAAGCTCAAGACAAGGAGGCATTTAAAGCCGTCAATCTAAACCTGCCTCAATtactgccatttaaaaaaaaacaaacaaaaaaaaacaagtggaGATGTGGACCAAAAGAAAACGAGTGCaatagaaagagagaaatatggTGAACAAAAGACTCAGGCAGTGTAGATGTTTTGTAACACCATTGAATTTCTCAAGGGCTGCTGAAAATTTCCACTGCTCATAGCAACAAATGGTTCTTAATGTCTATGAAGAGACACGTCAAGTGCTACTGAGGCCAATACAGAATGTGTTATCttgaattttaaatcaatagaCCGTGGACTTTGTCGCAACGTCTTTTTCTTCACATAACTTATGTCAAAGTATTTAATTACTGCTAAGTATTTGCTATTTCAGTATTTGTGGTAGATAAATGTACCCTGTATGTAGAGGTACGATATAACAATTGATTAAATTCTGAATATATGGCTCAGTTGTTGCAGTTCGGTCAGGGTAGTTCTATTAGTGTCCTTAAACAACCGCACAAGAAGTCTATTTTTACGTAAAATCTGATGGTGACGTTTACAAAGACATTTCAAAGCAAATCAACCAATGAGATAAGTATCACAAACCGGGGAAACTGTTTGAGCAGCATCACATCTGAGGACTGACACCCCATGTTCCGGATTCATCCGTCATGGGCTGCGGCGAGGACGAGCGGTGAAGCAGAACGGCAGACTCTTAATTGAGACGGGCGTGCAGGACGGGCCGTATACCGGAGGGAGGAGCGATCTGACCCCAACCTCTGCCGGAGTTCAAATACTCGATAGACTGTGACGAATCATAAAAGCACTTTTGGAATGCCAACAGATGAACTGTAGCAAACAACAGAGGAAGACTCATTTGCGTTGAGTGGGCTGATGCGCGCGAGACAGCCGGACACAGCGGACCGTGATGCAGATGATCGAGACACTGGTGTCGGAAACGTTCGCCGATGATGTTTTGGACAGTGGACCGAAGATGGCGGACTCGCATCGAATACAAACTTTTCAGGCAATCTTCTGCGTTAGATTATATCCGACATTTAATGCCACTCTGTTCCGTGTATTATAGGGCCTCTCGATTTGCCTCACCTGGAGTTCCCGTGTTGTGCCGTGTCCATCAGTCTGCTAAACAAGTAGATTAATGATTATTTACCTAAGCTGTGTGTAGTTCTGGCTTTGTAGATGAATAGAGTGGCCGAACGTATCTCTCATGAGCCGCTTCACTAGCTAGAACGGCTTCGTATTCAACTTAAAAGCAAGCAATTTAATAACGACACAGTCTGAGTGCTTTCTGGCAACATTGCCTATCTGGTTCGAACTCCCGGGTCTTCTTTCCAACTTGGCTCTGACTTGATGTACCctcaaaaatgtgaatatatatatccTGGACAATCGCTAATAGCACAGGAATGTGGGCTGAGAGACAGCTGACTGGGTCTTCATTATAGACGTCATCACTGAATGTCTTTTTGTGATTAATATTAGTTCACATGCAGTATCTACATTTAAGAATACCTGCATGATTATGTCTTTTATACATGATTCATTAATGTACGCTACAGCACCTTTGGTAACTTTATGGTCTGTATTCAGCTGAATACAACCAAATATCTTATATACTCCAAAAGCAATTACACATGTTCTAATAAAACGATGTTGCCAAAAAAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20368 CNIH, ERV14; protein cornichon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113081 lncRNA downstream 72716 10317071 ~ 10317400 (-) True G76426
TU113074 lncRNA downstream 136255 10253025 ~ 10253861 (-) True G76421
TU113066 lncRNA downstream 147934 10241959 ~ 10242182 (-) True G76413
TU113040 lncRNA downstream 205594 10184094 ~ 10184522 (-) True G76388
TU112932 lncRNA downstream 283937 10098265 ~ 10106179 (-) True G76327
TU113138 lncRNA upstream 6312 10403957 ~ 10411838 (-) True G76458
TU113174 lncRNA upstream 26970 10424615 ~ 10445156 (-) True G76488
TU113180 lncRNA upstream 38547 10436192 ~ 10460399 (-) True G76489
TU113191 lncRNA upstream 57946 10455591 ~ 10456512 (-) True G76493
TU113376 lncRNA upstream 474161 10871806 ~ 10872087 (-) True G76618
XM_043250725.1 mRNA downstream 5468 10383532 ~ 10384648 (-) True LOC122352948
XM_043250724.1 mRNA downstream 6784 10382676 ~ 10383332 (-) True LOC122352947
XM_043250197.1 mRNA downstream 9042 10380416 ~ 10381074 (-) True LOC122352676
XM_043250195.1 mRNA downstream 11098 10377864 ~ 10379018 (-) True mrpl49
XM_043250191.1 mRNA downstream 12388 10375502 ~ 10377728 (-) True znhit2
XM_043250831.1 mRNA upstream 84008 10481653 ~ 10762897 (-) False auts2a
XM_043250826.1 mRNA upstream 84008 10481653 ~ 10762896 (-) False auts2a
XM_043250828.1 mRNA upstream 84008 10481653 ~ 10762896 (-) False auts2a
XM_043250830.1 mRNA upstream 84008 10481653 ~ 10762896 (-) False auts2a
XM_043250827.1 mRNA upstream 84008 10481653 ~ 10762896 (-) False auts2a
TU113101 other downstream 6807 10380096 ~ 10383309 (-) True G76438
TU113103 other downstream 6807 10380096 ~ 10383309 (-) False G76438
TU113102 other downstream 9069 10380096 ~ 10381047 (-) False G76438
TU113078 other downstream 112415 10267354 ~ 10277701 (-) True fgf13b
XR_006251964.1 other downstream 764711 9589980 ~ 9625405 (-) False LOC122353179
TU113196 other upstream 80414 10478059 ~ 10480189 (-) True G76498
XR_006251870.1 other upstream 578683 10976328 ~ 10983737 (-) False rps6kb1a
XR_006251871.1 other upstream 580291 10977936 ~ 10983738 (-) False rps6kb1a
TU113393 other upstream 619465 11017110 ~ 11038731 (-) True G76625
XR_006251915.1 other upstream 778924 11176569 ~ 11207252 (-) False LOC122352715

Expression Profile