Fish Single-cell RNA Database

GENE ID: ENSDARG00000095800

Symbol	Location	Gene type	Genome version	Species
si:ch211-105n15.1	22: 6471584 ~ 6475418 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

	Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
	GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Immune cells (cluster: 20)	potential marker	NA
	GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Immune cells (cluster: 20)	potential marker	NA
	GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
	GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
	PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
	GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
	GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
	GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
	PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days
	PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
	GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone

After clicking the magnifying glass button, the clustering and expression information will be displayed below.