Quick start 1. Video


This video (we strongly recommend that you watch this tutorial before using it!) vividly demonstrates the use of online transcriptome analysis supported by built-in data. Considering the step-by-step nature of the tool, users can follow the video to reproduce the operation. You can also get a detailed description in the "HELP -> Usage -> Transcriptome analysis" section.



Quick start 2. Processing flow


There are two points that users need to pay attention to when following the arrow direction for online analysis. 1. User uploading data and selecting built-in data are optional. Users can only upload or select single source data or both. However, FishCODE does not support cross-species merged analysis, which requires special attention. 2. Batch effect removal is also optional (in fact, it is common sense that data removal from different sources fails), and users can make judgments based on the actual situation of the data.


Feature 1. Rich built-in data


We provide online transcriptome analysis supported by omics data. Users can combine FishCODE's rich built-in omics data with their own data to perform high-degree of freedom merge analysis. These omics data covering a wide range of experimental conditions can also be freely explored individually.



Feature 2. Image modification


FishCODE's visualization of transcriptomic results is mainly supported by Visual Omics (our team's early development software, a web-based platform for omics data analysis and visualization with rich graph-tuning capabilities), so the result picture analyzed here supports the fine adjustment of all 260 parameters of visual omics and the adjustment behavior of additive modification and working picture switching.