Fish Single-cell RNA Database

CELL TYPE: Dorsal habenula

Distribution of Dorsal habenula in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000101363	ano2b	4: 4267451 ~ 4358940 (+)
ENSDARG00000008867	rap1b	4: 18852821 ~ 18939338 (-)
ENSDARG00000060092	zgc:165481	7: 38456426 ~ 38477235 (-)
ENSDARG00000004015	adcyap1a	7: 71547747 ~ 71556734 (+)
ENSDARG00000056656	tspan18a	7: 26762717 ~ 26837282 (+)
ENSDARG00000087413	bean1	7: 44484853 ~ 44589233 (+)
ENSDARG00000035970	ptprn2	7: 40228422 ~ 40499386 (+)
ENSDARG00000077162	nwd2	7: 61050329 ~ 61177064 (+)
ENSDARG00000026582	iscub	5: 31860043 ~ 31868847 (+)
ENSDARG00000015722	kctd5a	3: 45261387 ~ 45281350 (-)
ENSDARG00000077847	olfm2a	3: 54012708 ~ 54238460 (+)
ENSDARG00000109742	gpr139	3: 9379877 ~ 9422448 (+)
ENSDARG00000070037	rgs8	6: 35459369 ~ 35488180 (-)
ENSDARG00000100336	pik3r6a	6: 23712911 ~ 23781581 (+)
ENSDARG00000044278	synpr	6: 41223204 ~ 41229787 (-)
ENSDARG00000005559	pou4f1	6: 4539953 ~ 4543005 (+)
ENSDARG00000069737	pou4f2	1: 36436936 ~ 36440301 (+)
ENSDARG00000087426	si:ch211-151p13.8	1: 45080897 ~ 45096935 (+)
ENSDARG00000053542	kctd12.2	1: 34295925 ~ 34297403 (+)
ENSDARG00000037178	zic2b	1: 29831759 ~ 29860895 (+)
ENSDARG00000015554	zic2a	9: 31282161 ~ 31287010 (+)
ENSDARG00000016022	zic5	9: 31274108 ~ 31314324 (-)
ENSDARG00000069843	kctd12.1	9: 21843915 ~ 21845783 (+)
ENSDARG00000061664	NA	9: 12403289 ~ 12424794 (-)
ENSDARG00000091573	si:ch1073-90m23.1	16: 31924934 ~ 31933740 (-)
ENSDARG00000055854	nr4a3	16: 27345383 ~ 27369782 (+)
ENSDARG00000095347	si:dkeyp-72h1.1	20: 18551657 ~ 18595559 (+)
ENSDARG00000014953	cnih3	20: 36233873 ~ 36298140 (+)
ENSDARG00000053110	pkib	20: 40371897 ~ 40451115 (-)
ENSDARG00000031222	lhx2b	8: 3085120 ~ 3101392 (+)
ENSDARG00000042961	zgc:100920	8: 23093155 ~ 23103547 (+)
ENSDARG00000055158	prox1a	17: 32822588 ~ 32865788 (-)
ENSDARG00000062510	bcl11ba	17: 18117029 ~ 18180747 (+)
ENSDARG00000071586	tgfbi	14: 26511041 ~ 26536504 (-)
ENSDARG00000071497	zic3	14: 32011689 ~ 32016615 (-)
ENSDARG00000067507	kctd8	14: 5936996 ~ 6004780 (+)
ENSDARG00000074680	rims1a	13: 27631926 ~ 27767443 (-)
ENSDARG00000030733	b3gat2	13: 27951688 ~ 28009574 (+)
ENSDARG00000045156	rgs9b	12: 18681423 ~ 18717659 (+)
ENSDARG00000004415	tcf7l2	12: 30977736 ~ 31103906 (-)
ENSDARG00000039117	tefa	12: 19144833 ~ 19153177 (-)
ENSDARG00000026762	fam126a	19: 2602903 ~ 2664922 (+)
ENSDARG00000056594	irx1b	19: 28127654 ~ 28130658 (-)
ENSDARG00000032575	ywhaz	19: 12164428 ~ 12193622 (-)
ENSDARG00000104254	cpne4b	19: 19028633 ~ 19173234 (+)
ENSDARG00000040965	zgc:101731	15: 29123031 ~ 29138266 (+)
ENSDARG00000097718	stard10	15: 47746176 ~ 47774711 (+)
ENSDARG00000076962	gdpd5b	15: 29387910 ~ 29484512 (+)
ENSDARG00000032614	msi2b	15: 30424645 ~ 30832897 (-)
ENSDARG00000017710	ppp1r14ab	15: 20204628 ~ 20233105 (-)
ENSDARG00000040799	sst1.1	15: 36156986 ~ 36158851 (+)
ENSDARG00000101959	etv1	15: 34172371 ~ 34214440 (-)
ENSDARG00000078859	g0s2	23: 39606108 ~ 39607679 (+)
ENSDARG00000093804	sst6	23: 29375676 ~ 29376859 (-)
ENSDARG00000036878	sh3bgrl2	23: 31405497 ~ 31423729 (+)
ENSDARG00000093089	tac3a	23: 28139489 ~ 28141419 (-)
ENSDARG00000056267	dixdc1b	21: 25068215 ~ 25119942 (+)
ENSDARG00000042970	gng8	21: 25231160 ~ 25235926 (+)
ENSDARG00000031463	syt6b	11: 24620742 ~ 24664031 (+)
ENSDARG00000074772	ccl44	11: 6182680 ~ 6188413 (-)
ENSDARG00000013087	ndrg3a	11: 25064519 ~ 25140425 (+)
ENSDARG00000105389	mmel1	11: 40530748 ~ 40605868 (+)
ENSDARG00000020758	tmem178	11: 30513656 ~ 30531106 (+)
ENSDARG00000015567	zic1	24: 4970580 ~ 4973765 (-)
ENSDARG00000031307	zic4	24: 4977862 ~ 4983423 (+)
ENSDARG00000071860	nrn1a	24: 2519761 ~ 2524955 (+)
ENSDARG00000023694	spon1b	25: 15647750 ~ 15800834 (+)
ENSDARG00000029239	syt9b	25: 15841670 ~ 15905903 (+)
ENSDARG00000013312	cadps2	25: 27937585 ~ 28269953 (+)
ENSDARG00000099464	CABZ01118738.1	KN149739.1: 4228 ~ 22025 (+)
ENSDARG00000100052	cckb	KN150698.1: 2793 ~ 8412 (+)
--	ano2	--
--	fam19a2	--
--	prkca	--
--	cnnm1	--
--	zgc:162707	--
--	zgc:158654	--
--	cabz01112647.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Dorsal habenula.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA554650 (6.5dpf)	Danio rerio	brain	9	Dorsal habenula	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000042970 (gng8)	marker	DOI:10.1038/nbt.4103
PRJNA554650 (6.5dpf)	Danio rerio	brain	9	Dorsal habenula	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000078859 (g0s2)	marker	DOI:10.1038/nbt.4103
PRJNA554650 (6.5dpf)	Danio rerio	brain	9	Dorsal habenula	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000069843 (kctd12.1)	marker	DOI:10.1038/nbt.4103
GSE158142 (5dpf)	Danio rerio	brain, eye	6	Dorsal habenula	baseline	5dpf, untreatment	ENSDARG00000042970 (gng8)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (5dpf)	Danio rerio	brain, eye	6	Dorsal habenula	baseline	5dpf, untreatment	ENSDARG00000104254 (cpne4b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (15dpf)	Danio rerio	brain, eye	10	Dorsal habenula	baseline	15dpf, untreatment	ENSDARG00000042970 (gng8)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (15dpf)	Danio rerio	brain, eye	10	Dorsal habenula	baseline	15dpf, untreatment	ENSDARG00000077162 (nwd2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (15dpf)	Danio rerio	brain, eye	10	Dorsal habenula	baseline	15dpf, untreatment	ENSDARG00000069843 (kctd12.1)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Dorsal habenula

Distribution of Dorsal habenula in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences