Fish Single-cell RNA Database

CELL TYPE: Otic vesicle

Distribution of Otic vesicle in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000043781	psmb10	4: 77207693 ~ 77218637 (-)
ENSDARG00000045705	meig1	4: 9609905 ~ 9611875 (+)
ENSDARG00000075800	calml4a	7: 34492744 ~ 34496196 (+)
ENSDARG00000068460	otog	7: 39463050 ~ 39537292 (-)
ENSDARG00000076933	aldh1a3	7: 9721385 ~ 9803154 (-)
ENSDARG00000061850	si:dkey-19b23.13	7: 20471315 ~ 20502769 (+)
ENSDARG00000036426	zgc:103586	7: 20518218 ~ 20521608 (+)
ENSDARG00000093957	si:dkey-251i10.2	5: 67463027 ~ 67471375 (-)
ENSDARG00000034424	atp1b2b	5: 38475531 ~ 38506981 (-)
ENSDARG00000033104	tmc2a	5: 55221593 ~ 55251994 (+)
ENSDARG00000103848	apba1a	5: 52625975 ~ 52733569 (+)
ENSDARG00000030311	tmc2b	5: 25624819 ~ 25645593 (-)
ENSDARG00000075714	si:dkey-27p23.3	5: 57901168 ~ 57920600 (-)
ENSDARG00000030839	tescb	5: 32141790 ~ 32148529 (+)
ENSDARG00000030961	ak8	5: 29671681 ~ 29711948 (+)
ENSDARG00000097646	BX511021.2	3: 32186134 ~ 32187385 (-)
ENSDARG00000077467	sox10	3: 1492174 ~ 1501255 (+)
ENSDARG00000025615	prr15la	3: 24189804 ~ 24197270 (+)
ENSDARG00000027196	si:dkey-16l2.17	3: 32689707 ~ 32696592 (+)
ENSDARG00000058140	ttc25	3: 17910569 ~ 17928233 (+)
ENSDARG00000088140	hsd17b7	6: 34943351 ~ 34958274 (-)
ENSDARG00000006207	gpx1b	6: 42338309 ~ 42341219 (+)
ENSDARG00000062978	ccdc151	6: 8250382 ~ 8264751 (-)
ENSDARG00000061797	zgc:154006	2: 24386453 ~ 24403153 (-)
ENSDARG00000011326	ankrd45	2: 35615547 ~ 35731776 (+)
ENSDARG00000020746	gfi1aa	2: 10766744 ~ 10785866 (+)
ENSDARG00000103545	tctex1d1	2: 14207559 ~ 14272083 (-)
ENSDARG00000076959	si:ch211-38m6.6	2: 7847480 ~ 7874384 (+)
ENSDARG00000078644	theg	2: 52122663 ~ 52139696 (+)
ENSDARG00000040306	otomp	2: 41504752 ~ 41518340 (-)
ENSDARG00000103521	capsla	2: 53890006 ~ 53896300 (-)
ENSDARG00000075870	triobpa	1: 54037077 ~ 54062112 (+)
ENSDARG00000028899	tekt4	1: 54613757 ~ 54622227 (-)
ENSDARG00000053535	lmo7b	1: 34365845 ~ 34450784 (-)
ENSDARG00000001870	atp1a1a.4	1: 1689775 ~ 1706159 (+)
ENSDARG00000054680	chrna9	1: 23406403 ~ 23417937 (+)
ENSDARG00000053315	tmprss3a	9: 19550367 ~ 19585848 (-)
ENSDARG00000086215	gpr156	9: 9675926 ~ 9705512 (-)
ENSDARG00000055589	s100t	16: 22681818 ~ 22683386 (-)
ENSDARG00000058528	cnot10	16: 7703534 ~ 7730836 (+)
ENSDARG00000069815	dnali1	16: 33925743 ~ 33930759 (-)
ENSDARG00000015543	s100a1	16: 29385565 ~ 29387215 (-)
ENSDARG00000087373	dnah5	16: 9053275 ~ 9267496 (+)
ENSDARG00000070584	clic5b	20: 43925266 ~ 43968859 (+)
ENSDARG00000041375	si:ch211-57i17.5	20: 46765733 ~ 46773258 (-)
ENSDARG00000026473	six1b	20: 20499869 ~ 20505918 (+)
ENSDARG00000095457	si:ch211-147d7.5	20: 37831352 ~ 37831939 (-)
ENSDARG00000017983	rsph14	8: 44566708 ~ 44586985 (-)
ENSDARG00000055294	atoh1a	8: 29593986 ~ 29595615 (+)
ENSDARG00000058940	si:ch211-248e11.2	8: 11542852 ~ 11550273 (-)
ENSDARG00000069262	erich3	8: 17933475 ~ 17947205 (+)
ENSDARG00000079869	si:ch211-218o21.4	8: 37046010 ~ 37056622 (-)
ENSDARG00000034457	si:ch211-163l21.7	8: 23781028 ~ 23783633 (-)
ENSDARG00000062021	ccdc181	8: 18615938 ~ 18623104 (+)
ENSDARG00000042141	myo6b	17: 36687094 ~ 36842267 (-)
ENSDARG00000020581	otofb	17: 50313650 ~ 50374005 (-)
ENSDARG00000070440	atp6v1c2	17: 51655229 ~ 51679784 (-)
ENSDARG00000087556	pacrg	17: 27545183 ~ 27706743 (+)
ENSDARG00000052277	cabp2b	14: 46223458 ~ 46301887 (+)
ENSDARG00000026406	anxa5a	14: 46410766 ~ 46434196 (+)
ENSDARG00000041617	nme5	14: 6954579 ~ 6961746 (+)
ENSDARG00000036189	spata4	14: 36393854 ~ 36397876 (-)
ENSDARG00000037495	rtn4rl2b	14: 17197132 ~ 17200874 (+)
ENSDARG00000063411	lrrc73	13: 3954540 ~ 3966255 (+)
ENSDARG00000031483	col9a1b	13: 39119460 ~ 39160018 (-)
ENSDARG00000069374	sh2d4ba	13: 21600946 ~ 21621856 (+)
ENSDARG00000089519	fbln7	13: 47750933 ~ 47800342 (-)
ENSDARG00000068678	iqcg	18: 27843776 ~ 27897217 (-)
ENSDARG00000021462	daw1	18: 46382484 ~ 46394080 (+)
ENSDARG00000056247	bricd5	12: 18551597 ~ 18560500 (-)
ENSDARG00000045038	tekt3	12: 37327867 ~ 37343858 (-)
ENSDARG00000055128	armc4	12: 23026760 ~ 23129458 (-)
ENSDARG00000096777	si:ch73-81k8.2	12: 28899760 ~ 28910434 (-)
ENSDARG00000075515	cd37	12: 28971580 ~ 28983584 (-)
ENSDARG00000096637	si:dkey-11c5.11	12: 27236871 ~ 27242533 (-)
ENSDARG00000015144	sh2d4bb	12: 29289387 ~ 29305533 (-)
ENSDARG00000040513	zgc:92313	12: 4241458 ~ 4249000 (-)
ENSDARG00000067831	tbata	12: 47907277 ~ 47929058 (+)
ENSDARG00000070480	agr2	19: 30400372 ~ 30404096 (-)
ENSDARG00000102995	rbm24a	19: 46113828 ~ 46148977 (+)
ENSDARG00000078522	si:ch211-80h18.1	19: 3086851 ~ 3127290 (-)
ENSDARG00000036773	s100s	19: 7595924 ~ 7609286 (+)
ENSDARG00000035694	stm	19: 3137518 ~ 3167878 (-)
ENSDARG00000092099	si:ch211-133n4.6	19: 3186669 ~ 3193912 (-)
ENSDARG00000069888	cldna	15: 2655566 ~ 2657508 (-)
ENSDARG00000033056	zgc:171927	15: 31282220 ~ 31287970 (-)
ENSDARG00000101331	tekt1	15: 33865312 ~ 33878283 (+)
ENSDARG00000070868	cfap126	23: 19977120 ~ 19981813 (+)
ENSDARG00000009544	cldnb	21: 25765734 ~ 25766840 (+)
ENSDARG00000009215	zgc:112437	21: 25773530 ~ 25774605 (-)
ENSDARG00000098112	btc	21: 19368720 ~ 19389197 (+)
ENSDARG00000089578	xrra1	21: 21782331 ~ 21791098 (-)
ENSDARG00000020544	rem1	11: 24313931 ~ 24332052 (+)
ENSDARG00000032885	si:ch211-226m7.4	11: 28620683 ~ 28631342 (+)
ENSDARG00000009727	twf2b	11: 17965098 ~ 17981427 (-)
ENSDARG00000045023	lhfpl5a	11: 2829812 ~ 2838699 (-)
ENSDARG00000015010	ccdc114	11: 40713723 ~ 40728380 (-)
ENSDARG00000099903	si:ch211-193l2.10	11: 42101661 ~ 42106310 (-)
ENSDARG00000033610	morn5	10: 9397305 ~ 9410068 (-)
ENSDARG00000044261	si:ch211-243g18.2	10: 9550419 ~ 9571012 (+)
ENSDARG00000054050	vsig8a	10: 19525839 ~ 19551118 (+)
ENSDARG00000074708	armc3	24: 17048078 ~ 17067284 (-)
ENSDARG00000045302	smpx	24: 25467465 ~ 25500712 (+)
ENSDARG00000058147	dnajc5b	24: 24808955 ~ 24824899 (+)
ENSDARG00000057632	ppp1r42	24: 23730061 ~ 23740899 (+)
ENSDARG00000031248	enkur	24: 6673200 ~ 6678640 (-)
ENSDARG00000105147	osbpl1a	22: 16320076 ~ 16348536 (+)
ENSDARG00000053074	gipc3	22: 3303671 ~ 3328241 (+)
ENSDARG00000060933	baiap2l2b	22: 29135846 ~ 29166693 (+)
ENSDARG00000043242	si:dkey-222f2.1	22: 5727753 ~ 5739360 (+)
ENSDARG00000062103	ankrd24	22: 21359164 ~ 21392748 (-)
ENSDARG00000089952	dynlrb2	25: 21895182 ~ 21908644 (+)
ENSDARG00000101455	si:ch211-284k5.2	25: 1035656 ~ 1040972 (+)
ENSDARG00000101577	si:ch211-172l8.4	25: 13620555 ~ 13625573 (+)
ENSDARG00000051876	ush1c	25: 22643954 ~ 22704233 (+)
ENSDARG00000075177	ribc2	25: 16747475 ~ 16755340 (-)
ENSDARG00000061899	iqub	25: 27873671 ~ 27912373 (+)
--	c5h11orf1	--
--	cfap77	--
--	cu856539.4	--
--	eef1a1b	--
--	efcab10	--
--	grxcr1	--
--	iqca1l	--
--	pifo	--
--	rsph1	--
--	si:ch211-150j10.4	--
--	si:ch211-270n8.4	--
--	si:ch211-57h10.1	--
--	si:ch73-199k24.2	--
--	si:dkey-229d2.7	--
--	si:dkeyp-110e4.11	--
--	si:dkeyp-46h3.1	--
--	bx510946.1	--
--	cabz01086806.1	--
--	ccdc39	--
--	si:ch211-198i6.4	--
--	si:dkey-202l16.5	--
--	si:dkey-225f23.3	--
--	tmc1	--
--	si:ch211-261c8.5	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Otic vesicle.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE158142 (3dpf)	Danio rerio	head	14	Otic vesicle	baseline	3dpf, untreatment	ENSDARG00000040306 (otomp)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (3dpf)	Danio rerio	head	14	Otic vesicle	baseline	3dpf, untreatment	ENSDARG00000001870 (atp1a1a.4)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (3dpf)	Danio rerio	head	14	Otic vesicle	baseline	3dpf, untreatment	ENSDARG00000056247 (bricd5)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (3dpf)	Danio rerio	head	17	Otic vesicle	baseline	3dpf, untreatment	ENSDARG00000033104 (tmc2a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (3dpf)	Danio rerio	head	17	Otic vesicle	baseline	3dpf, untreatment	ENSDARG00000020581 (otofb)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (3dpf)	Danio rerio	head	17	Otic vesicle	baseline	3dpf, untreatment	ENSDARG00000075800 (calml4a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (3dpf)	Danio rerio	head	17	Otic vesicle	baseline	3dpf, untreatment	ENSDARG00000053074 (gipc3)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (3dpf)	Danio rerio	head	17	Otic vesicle	baseline	3dpf, untreatment	ENSDARG00000009727 (twf2b)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Otic vesicle

Distribution of Otic vesicle in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences